Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq17 143 3e-29 seq19 131 2e-25 seq18 89.7 5e-13 >seq17 Length=71137785 Score = 143 bits (158), Expect = 3e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20310237 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310178 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20310177 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20310119 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20310118 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 20310059 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| ||||| ||||| || || Sbjct 20310058 CATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCTTGAGGGGAGG 20310011 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20310465 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310406 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20310405 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20310347 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20310346 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20310287 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20310286 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20310239 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20310693 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310634 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20310633 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20310575 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20310574 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20310515 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20310514 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20310467 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20310921 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310862 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20310861 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20310803 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20310802 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20310743 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20310742 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20310695 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20311149 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311090 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20311089 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20311031 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20311030 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20310971 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20310970 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20310923 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20311377 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311318 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20311317 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20311259 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20311258 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20311199 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20311198 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20311151 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20311605 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311546 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20311545 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20311487 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20311486 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20311427 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20311426 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20311379 Score = 134 bits (148), Expect = 1e-26 Identities = 168/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || | |||||||| ||||||||| | || || ||| ||| Sbjct 20311833 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311774 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||||||||| || ||| | ||||| Sbjct 20311773 GACACCATCGAGAACG-TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCA 20311715 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| |||| || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20311714 GCAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAA 20311655 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || ||||| |||| || || | ||||| || Sbjct 20311654 CATCCAGAAGGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20311607 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || ||||| || ||||||||||| | || || ||| ||| Sbjct 20312062 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 20312003 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | | | || | || |||| || ||||| || || ||| | ||||| Sbjct 20312002 TGACACCATCGAGAATGTCAAGGTGAAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCA 20311943 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || ||||||||||| || | ||||||||| |||||||| Sbjct 20311942 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAA 20311883 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || || | || ||||| |||| || || | ||||| || Sbjct 20311882 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 20311835 >seq19 Length=62516450 Score = 131 bits (144), Expect = 2e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| ||||| || || || || ||||| ||||||||| | || || ||| || Sbjct 32929036 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 32928977 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| || || || || |||||| | ||| Sbjct 32928976 AGTGACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGAC 32928917 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| ||||||| | || ||||| |||||||| || | ||||| || || ||| Sbjct 32928916 CAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTAC 32928857 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| ||||| |||| ||||| |||| || ||| |||| || || Sbjct 32928856 AACATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGG 32928807 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 32928805 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 32928746 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 32928745 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 32928687 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 32928686 GCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 32928627 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| ||||| |||| || ||| |||| || || Sbjct 32928626 CATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGG 32928579 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || || ||| ||| Sbjct 32928349 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 32928290 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| || || || || |||||| | ||||| Sbjct 32928289 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCA 32928231 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| ||||||| | || ||||| |||||||| || | ||||| || || ||||| Sbjct 32928230 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAA 32928171 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| ||||| |||| || ||| | || || ||| Sbjct 32928170 CATCCAGAAGGAGTCGACCCTGCACCTGGTCCTTCGTCTTAGGGGTGGC 32928122 >seq18 Length=67275902 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||||||||| || ||| ||||| ||| |||| || | || || ||| Sbjct 6147360 AAGATCCAAGACAAAGAGGGCATCCCCCTAGACCAGCAGAGGCTGATCTTTGCAGGGAAA 6147419 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | || |||||| || ||||||||||| | || | || ||||| Sbjct 6147420 CAGCTGGAAGATGGGCACACCCTGTCTGAATACAACATCCAGA--GAGTCCACTCTGCAC 6147477 Query 38448 TTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| ||||| ||||| || || Sbjct 6147478 TTGGTCCTGCGCTTGAGGGGAGG 6147500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499985816650880