Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq18 118 4e-21 seq26 104 9e-17 seq9 102 3e-16 seq11 100 1e-15 seq28452 91.5 6e-13 seq15 89.7 2e-12 seq3 89.7 2e-12 >seq18 Length=67275902 Score = 118 bits (130), Expect = 4e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||| || || || || || || || || |||||||| || || | || Sbjct 38084102 ATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 38084043 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | || || || || ||||||||||||||||||||||| || Sbjct 38084042 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 38083983 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 ||| | | || || | || || ||||| ||||||||| | |||||| | || || || Sbjct 38083982 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 38083923 Query 391230 ATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| |||| || ||||| Sbjct 38083922 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 38083885 >seq26 Length=51421553 Score = 104 bits (114), Expect = 9e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 |||||| | || || ||||| || || || | |||||||| || || | || |||| Sbjct 9313008 ATTTTCATGAAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGGATACA 9312949 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 | ||| | | || || || || ||||||||||||||||||||||| || ||| | Sbjct 9312948 ACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGA 9312889 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 | || || || || ||||| ||||||||| | |||||| | || || || ||| | Sbjct 9312888 CTGATCTTTGTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAA 9312829 Query 391236 AAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||||| | || ||||| |||| || ||||| Sbjct 9312828 AAGGAGTCCACTCTTCATCTAGTGTTGAGACT 9312797 >seq9 Length=91568626 Score = 102 bits (112), Expect = 3e-16 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 452314 TCCTCAAATTGAAATTACCTATGATGTTGATGCAAATGGTATTCTTAATGTGAGTGCAGT 452373 |||||| |||||| | || | |||| ||||||| ||||| ||||| ||||| ||| || Sbjct 4444365 TCCTCAGATTGAAGTCACTTTTGATATTGATGCCAATGGCATTCTCAATGTTTCTGCTGT 4444424 Query 452374 TGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACAATTACTAATGATAAAAACCGTTTA 452431 || || | || | |||||| |||| || ||||| || ||||||||||| ||| || Sbjct 4444425 GGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACCATCACTAATGATAAGGGCCGCTTG 4444482 Query 452432 TCTAAAGAAGATATTGAAAAAATGGTAGATGAAGCAGAAAAATTCAAGGATGATGATGA 452490 || ||||| |||||| ||||| | |||||||| |||| ||| | ||| ||||| Sbjct 4444483 AGCAAGGAAGACATTGAACGCATGGTTCAAGAAGCAGAGAAATACAAAGCTGAAGATGA 4444541 >seq11 Length=106225002 Score = 100 bits (110), Expect = 1e-15 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 |||||| ||||||| ||||||| || || |||||||||||||| ||||| || ||||| Sbjct 95627599 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 95627540 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACC 451425 |||||||| ||| ||||||||| || ||||| | | || || ||||| || Sbjct 95627539 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 95627487 >seq28452 Length=12210 Score = 91.5 bits (100), Expect = 6e-13 Identities = 170/247 (69%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 96049 TGCAATTTGTGGCACTAGGGGATCGTCAGGATTTGGGTCAGCCAATAAACTGCATAA--- 96105 |||||| | |||||||||||| || || || ||||| ||| || | || | || Sbjct 9566 TGCAATCTCTGGCACTAGGGGGTCATCTGGGTTTGGATCA--CATAGCAGTGAACAAATG 9623 Query 96106 GGATAAAAGTACTTTACTAATGTTTAATGCTGGGCTCCAGTTATTTTTTAAAATATCTAA 96165 ||||||||| |||||| ||| |||| || || ||| | | ||| |||||| | Sbjct 9624 GGATAAAAGAACTTTAGAAATAGTTAAAGCAGGAGACCACTGTGATCTTAGAATATCGAG 9683 Query 96166 ACAAATTGCA-CCTGTAGTACTAATATTTGGATGATAAATAGGAGTTTTAAATATAATTT 96224 |||||| | || || | ||||||||||||||||||| ||| ||||| || | Sbjct 9684 ACAAATGCCTGCCATTACTGTTAATATTTGGATGATAAATTCTTGTTGTAAATGCAACCT 9743 Query 96225 TAGGAGGCTTATATGGATAGTCTTCAGGAAAAGTAATTTCTAATTGGAATACTCCACCCT 96284 |||| || || | || |||||| ||||||| |||| || |||||| || || | Sbjct 9744 TAGGTGGTTTGAAGGGGTAGTCTGTAGGAAAATGAATTGTCAAAAAGAATACACCGCCTT 9803 Query 96285 CATAGGG 96291 ||| || Sbjct 9804 GATATGG 9810 >seq15 Length=81904557 Score = 89.7 bits (98), Expect = 2e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 ||||| | || || | || || || || ||||||||||| | || || || || || Sbjct 48653041 GTTACCAACGCTGTTGTCACCGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 48653100 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| ||| |||||||||| | || || |||||||| || ||||| || || || Sbjct 48653101 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 48653160 Query 451433 GCTGCTCTAGCATATGG 451449 |||||| | || ||||| Sbjct 48653161 GCTGCTATTGCCTATGG 48653177 Score = 84.2 bits (92), Expect = 9e-11 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 452230 TGAAGGAGAACGTGCAATGACACGAGATAATAATAAACTAGGAGAATTTACTCTTTCAAA 452289 |||||| |||||||| ||||| ||||| || || || | ||| || || Sbjct 48654484 TGAAGGTGAACGTGCCATGACCAAGGATAACAACCTGCTGGGCAAGTTTGAACTCACAGG 48654543 Query 452290 CATTCCTCCTATGCCAAGGGGAACTCCTCAAATTGAAATTACCTATGATGTTGATGCAAA 452349 ||| |||||| || |||| |||||| |||||| | || | |||| ||||||| || Sbjct 48654544 CATACCTCCTGCCCCCCGGGGTGTTCCTCAGATTGAAGTCACTTTTGATATTGATGCCAA 48654603 Query 452350 TGGTATTCTTAATGTGAGTGCAGTTGAAAA-ATCATCTGGAAAATCAGAAAAA-ATTACA 452407 ||| ||||| ||||| ||| || || || | || | |||||| |||| || ||||| Sbjct 48654604 TGGCATTCTCAATGTTTCTGCTGTGGATAAGAGCA-CAGGAAAAG-AGAACAAGATTACC 48654661 Query 452408 ATTACTAATGATAA 452421 || ||||||||||| Sbjct 48654662 ATCACTAATGATAA 48654675 >seq3 Length=120038259 Score = 89.7 bits (98), Expect = 2e-12 Identities = 152/219 (69%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACAC-TGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 ||| | ||||| || || || | |||| || || || || ||||| | || || | || Sbjct 100094183 ATGCAGATTTTTGTGAAGACTCCTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTC 100094124 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || |||| | | | || || || ||||||||||||||||||||||| || Sbjct 100094123 GGATACAATAGAAGATGTAATGGTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCA 100094064 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAA 391228 ||| | | || || | || || || | ||||||||| ||||| | || || || Sbjct 100094063 GCAAAGACTGATCTTTGCTGGCAAGCACGTGGAAGATGGACATGCTTTGTCTGACTACAA 100094004 Query 391229 TATTGATAAGGATGCAACACTTCACTTAGTATTAAGACT 391267 ||| | ||||| | || ||||| ||||| || ||||| Sbjct 100094003 CATTCAAAAGGAGTCCACTCTTCATTTAGTGTTGAGACT 100093965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1974961337431956