Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq11 96.9 4e-15 >seq11 Length=106225002 Score = 96.9 bits (106), Expect = 4e-15 Identities = 187/271 (69%), Gaps = 4/271 (1%) Strand=Plus/Plus Query 9372 GCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGA 9431 |||||||||||||||| || | ||||| || ||||| ||||| ||| |||| | Sbjct 40220878 GCATCAATCTCATCAACAAACAAGATACAGGGAGCATTTTTCCGGGCCATTGCAAACATG 40220937 Query 9432 TCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 || | |||| | ||| ||||||||||||||||||| || | | | | ||| Sbjct 40220938 TCACCAACCGGAGCTGGGCCAACACCAACAAACATCTCCAGGAACTCAG-ACCCGTTCAT 40220996 Query 9492 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9550 | ||||||||| ||| || || || || | || ||| ||||| ||||| || || Sbjct 40220997 GGTGATGAAGGGCACACGAGCCTCCCCTGCGGTTGCCTTGGCTAGAAGCGTCTTGCCAGT 40221056 Query 9551 ACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA-TC 9609 || || ||| | ||| ||||| |||| |||||| ||||| ||| | |||| | Sbjct 40221057 ACTGGGAGAACCTGTGAGCAGGGCTCCCCTTGGAATTTTGGCCCCAAGGTCCTAGTACTG 40221116 Query 9610 TCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | | |||| ||| || |||| ||||| ||| Sbjct 40221117 TTTGGGGTT-CTTCAGGAAATTCACAAACTC 40221146 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/93 (83%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 116969 CATCA-TCCAATT-TCCCATAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATC 117026 ||||| ||| ||| || ||| || || |||| ||||||||||||||| |||||||| || Sbjct 87088203 CATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTC 87088262 Query 117027 AAGGCTAATGTTTTCCATAAAGTCAAATGGATT 117059 || ||| ||||||||||||||||||||||| Sbjct 87088263 CAGTGAAATATTTTCCATAAAGTCAAATGGATT 87088295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589760243052680