Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq17 131 1e-25 seq19 96.9 2e-15 seq18 91.5 1e-13 >seq17 Length=71137785 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||| ||| | ||| || ||||| ||||| ||||| || Sbjct 20310011 CCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310070 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | || |||| ||||||||||| |||||||| || || | ||||||||| | || Sbjct 20310071 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310130 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | ||||| ||||| ||||| |||||| | || | |||| || ||| || Sbjct 20310131 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310190 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||||| || ||||| | |||||||| ||||||||||| Sbjct 20310191 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310237 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20310257 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20310316 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20310317 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20310376 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20310377 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20310436 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20310437 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20310465 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20310485 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20310544 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20310545 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20310604 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20310605 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20310664 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20310665 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20310693 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20310713 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20310772 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20310773 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20310832 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20310833 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20310892 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20310893 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20310921 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20310941 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20311000 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20311001 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20311060 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20311061 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20311120 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20311121 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20311149 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20311169 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20311228 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20311229 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20311288 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20311289 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20311348 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20311349 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20311377 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20311397 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20311456 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20311457 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20311516 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20311517 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20311576 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20311577 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20311605 Score = 116 bits (128), Expect = 2e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20311625 ACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCCTCC 20311684 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || || | ||||||||| | || | ||||| ||||| Sbjct 20311685 AGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGG 20311744 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 20311745 ATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 20311804 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| | |||||||| ||||||||||| Sbjct 20311805 CCCGTCAAGGTCTTCACGAAGATCTGCAT 20311833 Score = 114 bits (126), Expect = 8e-21 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || ||| | || |||| ||| Sbjct 20311853 ACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCC 20311912 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| |||||||| || | | ||||||||| | || | || || || || Sbjct 20311913 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCTTTTTCTTGG 20311972 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 |||||| ||||| || || || | |||| || ||| || || | || ||||||| Sbjct 20311973 ATCTTCACCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTTT 20312030 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || ||||| ||||| |||||||||||||| Sbjct 20312031 TACCAGTGAGGGTCTTTACAAAGATCTGCAT 20312061 >seq19 Length=62516450 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| ||| | || || ||||| ||||| || || ||| Sbjct 32928579 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 32928638 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || |||||||| || || | |||||||| | || Sbjct 32928639 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32928698 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | |||| || ||| || Sbjct 32928699 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCCACC 32928758 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 32928759 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 32928806 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | | ||||| ||| | || || ||||| || || || || ||| Sbjct 32928351 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATATTGTAATCAGAA 32928410 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || |||||||| || || | |||||||| | || Sbjct 32928411 AGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32928470 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || ||||| || ||||| || ||| | || | |||| || ||| || Sbjct 32928471 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACC 32928530 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 32928531 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 32928578 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | || |||| |||||||| || || ||||| Sbjct 32928159 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAG 32928218 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 32928219 ATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTTC 32928278 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 32928279 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 32928338 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 32928339 AAGATCTGCATA 32928350 >seq18 Length=67275902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 160/229 (70%), Gaps = 7/229 (3%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 ||||||||||| | || |||||||| | ||| ||| ||| ||||| || || || Sbjct 6147500 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCT--CTGGATGTTGTATTCAGAC 6147443 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | | |||| ||||||||||| || ||||| || || | ||||||||| | || Sbjct 6147442 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCTAGGGGG 6147383 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | ||||| ||||| ||||| ||||| || || || | |||| || ||| | Sbjct 6147382 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGAC--ATTCTCGATGGGGTCACTGGGCTCCA 6147325 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || |||| | || | || | ||| |||| ||||||||||| Sbjct 6147324 CCTCCAGGGGGATGG-TCTTACGGTCAAGGTCATCACGAAGATCTGCAT 6147277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324515273791896