Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq23 161 8e-34 seq15 122 7e-22 seq18 105 5e-17 seq11 96.9 3e-14 seq19 93.3 3e-13 seq26 89.7 4e-12 seq17 86.0 5e-11 >seq23 Length=48866549 Score = 161 bits (178), Expect = 8e-34 Identities = 374/554 (68%), Gaps = 16/554 (3%) Strand=Plus/Minus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 || || || || || | || ||||| || ||||| || || | || |||| || Sbjct 22438646 GCCATCGGCATCGACCTGGGCACCACCTACTCCTGTGTGGGGGTGTTCCAGCATGGCAAG 22438587 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 || || || |||||||| || || || ||| | ||||| || ||||| | ||||| Sbjct 22438586 GTGGAGATCATTGCCAACGACCAGGGCAACCGCACTACCCCCAGCTATGTGGCCTTCACC 22438527 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGGTAATCCTACC 550168 || || || | | | || ||||| || || | || ||||| || ||||| Sbjct 22438526 GATACAGAGCGGCTCATCGGCGATGCGGCCAAGAACCAGGTAGCCA-TG--AATCCCCAG 22438470 Query 550169 AATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAG 550228 || ||| | |||||||| |||||| | || || |||| ||||||||| | ||| || Sbjct 22438469 AACACTGTCTTTGATGCCAAACGTCTGATCGGCAGAAAATTTAATGATCCTGTTGTGCAA 22438410 Query 550229 GCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTA--TATTG 550286 |||||||||| | ||||||||||||| | | |||| || || || | || || Sbjct 22438409 TCAGATATGAAACTTTGGCCTTTCCAAGTAATCAATGAAGGAGGCAAGCCCAAGGTAATG 22438350 Query 550287 AAG--CTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGT 550344 | |||| | | ||| | ||| |||| || || |||| || |||||||| Sbjct 22438349 GTGTCCTACAAAGG--GGAAAAG--AAAGCTTTTTATCCTGAGGAAATCTCTTCTATGGT 22438294 Query 550345 TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAA-GTTACGGATGCAG 550403 | | || ||||| | || || || ||| |||| | | | || || |||| | Sbjct 22438293 ACTGACTAAGATGAAGGAGACTGCTGAGGCATTT-TTGGGCTACACTGTCACCAATGCTG 22438235 Query 550404 TAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGAC 550463 | || ||||| ||||| || || |||||||| ||||| || || || || ||||| || Sbjct 22438234 TGATCACTGTGCCAGCCTACTTCAATGACTCTCAACGCCAGGCCACCAAGGATGCAGGTG 22438175 Query 550464 GTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCAT 550523 ||| || || || ||||| || | |||||||||||||| ||||||||||| |||| | Sbjct 22438174 TTATCGCAGGTCTCAATGTGCTAAGAATTATCAATGAACCCACTGCTGCTGCCATTGCCT 22438115 Query 550524 ATGGACTTGATAAA 550537 |||| | |||||| Sbjct 22438114 ATGGCTTAGATAAA 22438101 >seq15 Length=81904557 Score = 122 bits (134), Expect = 7e-22 Identities = 109/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| | || || | || ||||| || ||||| |||||||| || ||||| ||||| Sbjct 48653041 GTTACCAACGCTGTTGTCACCGTACCTGCCTATTTCAATGACTCTCAGCGTCAGGCTACC 48653100 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| ||||||||| || || || ||||| || |||||||| || |||||| Sbjct 48653101 AAAGATGCTGGAACTATTGCTGGTCTCAACGTACTTCGAATCATCAATGAGCCAACTGCT 48653160 Query 550511 GCTGCACTTGCATATGG 550527 ||||| |||| ||||| Sbjct 48653161 GCTGCTATTGCCTATGG 48653177 Score = 102 bits (112), Expect = 7e-16 Identities = 133/184 (72%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| ||| |||||| ||||| | || |||| || || ||| Sbjct 48652219 GGCATTGATCTTGGCACCACCTATTCTTGTGTGGGTGTCTTCCAGCATGGAAAGGTGGAA 48652278 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||| | || || || ||| Sbjct 48652279 ATAATTGCCAATGATCAGGGGAACCGAACCACCCCAAGCTATGTCGCCTTTACTGATACT 48652338 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTATT 550177 |||| || | |||||||| ||||| | |||| | | ||||| ||||| || || Sbjct 48652339 GAACGATTGATCGGTGATGCTGCAAAGAACCAAGTCGCAATGAATCCCACCAACACGGTT 48652398 Query 550178 TTTG 550181 |||| Sbjct 48652399 TTTG 48652402 >seq18 Length=67275902 Score = 105 bits (116), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 38083894 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACGTCCATCTT 38083951 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || ||||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 38083952 CCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 38084011 Query 563384 GAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTAACAGTTT 563443 | || || ||||| || |||||||| | | | || ||||| | || | Sbjct 38084012 GGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGTCT 38084071 Query 563444 TACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | || || || || || |||||||| ||||| Sbjct 38084072 TCCCCGTTAGGGTCTTCACGAAAATCTGCAT 38084102 >seq11 Length=106225002 Score = 96.9 bits (106), Expect = 3e-14 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 ||||| ||||||| | ||||||||||||||||| ||||| | ||||| || || || Sbjct 95627599 GTTACTCATGCAGTTGTTACTGTACCAGCATATTTCAATGATGCCCAACGCCAGGCAACC 95627540 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 |||||||||||| |||||||||| | ||||| | | || |||||||| || Sbjct 95627539 AAAGATGCTGGAACTATTGCTGGATTGAATGTCATGAGGATCATCAATGAGCC 95627487 >seq19 Length=62516450 Score = 93.3 bits (102), Expect = 3e-13 Identities = 159/226 (70%), Gaps = 6/226 (3%) Strand=Plus/Plus Query 563253 CCTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGA 563310 ||| |||||||| || || || ||||| ||| | ||| ||||||||||||| ||| Sbjct 32928356 CCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGG--ATATTGTAATCAGAAAGA 32928413 Query 563311 GTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATT 563370 || | |||||| || || || |||||||| || || || ||||| ||||| ||||| Sbjct 32928414 GTGCGACCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATG 32928473 Query 563371 CCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTG-AGTACATTC 563429 ||||| ||||| || || || || || ||| || || ||| || | ||| || Sbjct 32928474 CCTTCCTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTAC-CTC 32928532 Query 563430 GAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 || || | || || || || || || || ||||| || |||||| Sbjct 32928533 CAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 32928578 >seq26 Length=51421553 Score = 89.7 bits (98), Expect = 4e-12 Identities = 97/127 (76%), Gaps = 4/127 (3%) Strand=Plus/Plus Query 563266 ACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTTGAATCTT 563323 || |||||||| || ||| |||| ||| ||||| |||| | ||| | | ||||| Sbjct 9312806 ACTAGATGAAGAGTGGACTCCTTTTG--AATGTTGTAGTCAGACAAAGTACATCCATCTT 9312863 Query 563324 CAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTT 563383 | ||||| || || |||| || ||||||||||| ||||||||||||||||| ||||| | Sbjct 9312864 CCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATCCT 9312923 Query 563384 GAATTTT 563390 | || || Sbjct 9312924 GGATCTT 9312930 >seq17 Length=71137785 Score = 86.0 bits (94), Expect = 5e-11 Identities = 156/224 (70%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 563254 CTGAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAG 563311 ||||| ||||| || || || || || ||| | | ||| || ||||| |||| || | Sbjct 20311841 CTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGG--ATGTTGTAGTCAGACAGGG 20311898 Query 563312 TTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTC 563371 | | |||||| || ||||| |||||||| || | || ||||| || || || || | Sbjct 20311899 TGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGC 20311958 Query 563372 CTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACAT-TCG 563430 ||||||| ||||| || || || || ||| || || ||| || | | || || Sbjct 20311959 CTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGC-TCCACCTCC 20312017 Query 563431 AGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||| | ||||||||||| || || || || || || ||||| Sbjct 20312018 AGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCAT 20312061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027714382959430