Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq3 82.4 1e-10 >seq3 Length=120038259 Score = 82.4 bits (90), Expect = 1e-10 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 2259 TGCGAGATCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGG 2318 || |||||||| |||||||| ||||| ||| |||| ||||| ||| |||| |||| ||| Sbjct 110759581 TGTGAGATCCAGCTGACCTGCTCTGTGGAGAATCCAAATGATAACGTCTCATTCAGGTGG 110759522 Query 2319 GAGGCCTTG--GGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCA 2376 ||| ||| || || | || | || | || ||| | | ||||||||||||| Sbjct 110759521 CAGG--TTGCAGGAAATCCATATCATAGTGAAACAAATCTCTCTATATCCTGGGACCCCA 110759464 Query 2377 GGAACAGCAGTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTT 2436 || | |||||| ||| ||| || ||||| || || || |||| ||| | | || | Sbjct 110759463 AGAGCCTCAGTGAAGAGACCTATACCTGCATAGCTGAGAATCCTGTCAGCTCTTTATCCT 110759404 Query 2437 TCACGGTCTCGGCCCAGA 2454 | | ||||| | | ||| Sbjct 110759403 CCTCTGTCTCTGACAAGA 110759386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629047950341720