Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq7 178 2e-39 seq15 95.1 2e-14 seq3 93.3 8e-14 >seq7 Length=108433636 Score = 178 bits (196), Expect = 2e-39 Identities = 185/243 (76%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| | || ||||| | || | ||| || ||||| ||||||||| ||||||||||| Sbjct 98108454 AGCAGTTGGCAGCCGTTGCTGACGTGGGTCATGACCTTCTGTTTGAGCTGGGCCACCTGC 98108513 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | | || || |||||||| || ||||| || | |||||| |||||| Sbjct 98108514 TCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGTTCTCGGCCTTGAGTGTCTTCACC 98108573 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 98108574 TTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCAGC 98108633 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 ||||| || || | ||| || || | |||||||| |||||||| ||||||| ||| || Sbjct 98108634 CGGTTTCGCAGCCGCTTGCGCTCTACTTTGATGCGCTCCTGGTCTTCCATGTTGATGGGG 98108693 Query 241625 GAC 241627 ||| Sbjct 98108694 GAC 98108696 Score = 136 bits (150), Expect = 7e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 241415 AGGACCTCCTGTTTGAGTTGGGCCACCTGGTCCCGCAGAACGGACGCGGTATTGGACAGT 241474 ||||||| ||| ||||| || |||||||| || ||||| | | ||| || | ||| Sbjct 103852510 AGGACCTTCTGCTTGAGCTGCGCCACCTGCTCGCGCAGCAGGCTCGCCGTGGACGCCAGC 103852569 Query 241475 CCTGCGTTGTCAGACTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGT 241534 | | ||| | ||||||| ||||||||||||||| || |||| |||||| ||||| Sbjct 103852570 TCAGTGTTCTGGCTCTTGAGCGTCTTCACTTTCTCCTCGAGGCGCGAGATGCGCTCCAGC 103852629 Query 241535 TTGCGCCGGCGGCATTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTG 241594 |||||| |||||| |||| ||| || | |||||| || || | ||| || || ||||| Sbjct 103852630 TTGCGCTTGCGGCACTTGGAGGCAGCGATGCGGTTGCGCAGCCGCTTGCGCTCTGCCTTA 103852689 Query 241595 ATGCGTTCCTGGTCCTCCATGTCGATCGGAGAC 241627 ||||| || || ||||||||||| || ||| Sbjct 103852690 ATGCGCTCTTGCGTGTCCATGTCGATGGGCGAC 103852722 Score = 89.7 bits (98), Expect = 1e-12 Identities = 88/115 (77%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | || || |||||||| ||||||| Sbjct 98108491 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCAGTGTTGGACAGCCCCGCGT 98108550 Query 238986 TATCAGACTTGAG--------CATTCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | |||||| | || |||||||| ||||||||||| |||||||| Sbjct 98108551 TCTCGGCCTTGAGTGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 98108605 >seq15 Length=81904557 Score = 95.1 bits (104), Expect = 2e-14 Identities = 97/124 (78%), Gaps = 2/124 (2%) Strand=Plus/Minus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||||| || || |||||||||||||||||| |||||| |||| |||||| ||| Sbjct 32342728 GTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTGG 32342669 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| |||||||||||||| |||| || |||||| ||| Sbjct 32342668 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 32342610 Query 213647 GGAC 213650 ||| Sbjct 32342609 AGAC 32342606 >seq3 Length=120038259 Score = 93.3 bits (102), Expect = 8e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||||||||| | ||||| || | ||||| |||| ||| Sbjct 33529715 TTCACTTTTTCCTCCAGCCGCGCGATCCTCTCCAGCTTCCTTTTCCGGCACTTGGAGGCA 33529774 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 33529775 GCGATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCT 33529834 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 33529835 ATGGGGGAC 33529843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931184558106880