Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 100 5e-16 seq14 93.3 8e-14 >seq11 Length=106225002 Score = 100 bits (110), Expect = 5e-16 Identities = 100/127 (79%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 25883 TGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCT 25942 |||||||||||||||| ||||| |||||||| || |||||| |||||| | || |||| Sbjct 87089923 TGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCTATATTCT 87089864 Query 25943 GGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGG 26001 |||||||| | | | |||| ||||| || || |||||||| || || || ||||| Sbjct 87089863 GGCTCAAG-AAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTATTAGCAGA 87089805 Query 26002 GACGAGG 26008 ||||||| Sbjct 87089804 GACGAGG 87089798 >seq14 Length=94672733 Score = 93.3 bits (102), Expect = 8e-14 Identities = 99/128 (77%), Gaps = 2/128 (2%) Strand=Plus/Minus Query 25880 GGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCT 25939 || |||| |||||||||||||| || || || || ||| || || ||||| || || | Sbjct 20026191 GGGTGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATAT 20026132 Query 25940 TCTGGCTCAAGCAGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGC 25998 ||||||| ||| | ||| |||| |||||| || || |||||||| |||||||||||| Sbjct 20026131 TCTGGCTAAAGAA-AAGAGGACTCATGCCTGGACTCACTTTTTCCAATGAGCTCATCAGC 20026073 Query 25999 AGGGACGA 26006 || || || Sbjct 20026072 AGAGATGA 20026065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928497562982080