Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq18 122 2e-22 seq17 102 2e-16 seq11 100 6e-16 seq3 93.3 8e-14 >seq18 Length=67275902 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||| ||| | ||| | ||| ||| || || || || ||||| Sbjct 38083876 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 38083934 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || ||| |||| |||| ||| || ||||||||||| | ||| || || ||||| || Sbjct 38083935 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 38083994 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||||| ||| | ||| || | || || Sbjct 38083995 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGAC 38084054 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || ||||| ||||| || || |||| || || | || |||||||| || Sbjct 38084055 CTCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 38084105 >seq17 Length=71137785 Score = 102 bits (112), Expect = 2e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| || || | || | || | ||| | |||||| ||| || || ||| Sbjct 20311832 ATCCCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCA 20311891 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| ||||| || |||||||| || ||||| || || || Sbjct 20311892 GACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGG 20311951 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || |||||||| ||||| || || || ||||| || | || | || Sbjct 20311952 GGGATGCCTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCC 20312011 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| |||||||||||||| | || || | ||| ||||||||| Sbjct 20312012 ACCTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 20312062 >seq11 Length=106225002 Score = 100 bits (110), Expect = 6e-16 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| |||||||| || ||||||||||| | ||| || ||||| || || ||||||| || Sbjct 21255761 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCGGGAGGAATTCCTTTTT 21255702 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || |||||||| ||| | |||||| | || ||||| |||| | Sbjct 21255701 TATCTTGGATCTTGGCCTTTACATTTTCTATTGCATCTGAGGGTTTGACTTCGGGAGTGA 21255642 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || | || | || || || || |||||||| || Sbjct 21255641 TGGACTTCCTTGTCAGGGTCTTCATGAAAATCTGCATCTT 21255602 >seq3 Length=120038259 Score = 93.3 bits (102), Expect = 8e-14 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368 ||||| | ||| | || |||||||| | ||| | ||| ||| || || || || ||||| Sbjct 100093956 CCACCACAAAGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGA-ATGTTGTAGTCAGA 100094014 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || | || |||| |||| || || ||||||||||| | ||| || || ||||| || Sbjct 100094015 CAAAGCATGTCCATCTTCCACGTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGG 100094074 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 |||||||| ||||| || || || |||||| ||| | ||| || | || || Sbjct 100094075 AATTCCTTCCTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGAC 100094134 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTA-ATGTTTTAATAAATATCTGCATTTT 192539 | ||||| ||||| || || || | || || | ||| |||||||| || Sbjct 100094135 CTTGAGAGTGATGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCATCTT 100094186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984102763569450