Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq18 120 2e-22 seq17 116 3e-21 seq26 89.7 4e-13 seq11 84.2 2e-11 seq3 82.4 6e-11 >seq18 Length=67275902 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || || ||| Sbjct 38083890 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACGTCCATC 38083949 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| ||||||||| || || ||||| || || || || Sbjct 38083950 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 38084009 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || | || || |||||||| || || Sbjct 38084010 CTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGTGATGGT 38084069 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || |||| ||| || || || |||||||| || Sbjct 38084070 CTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTT 38084105 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/227 (69%), Gaps = 3/227 (1%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| ||||| || || ||||| ||| | | ||||| || || | Sbjct 6147500 CCTCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTCT--GGATGTTGTATTCAGAC 6147443 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||| | ||| || || ||||| || ||| | |||| || ||||| || | || Sbjct 6147442 AGGGTGTGCCCATCTTCCAGCTGTTTCCCTGCAAAGATCAGCCTCTGCTGGTCTAGGGGG 6147383 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || |||||| | || | | |||| | || || Sbjct 6147382 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGGGTCACTGGGCTCCACC 6147323 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || | || || || | || ||||| | || || |||||||| Sbjct 6147322 TCCAGGGGGATGGTCTT-ACGGTCAAGGTCATCACGAAGATCTGCAT 6147277 >seq17 Length=71137785 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| ||||| |||| || || ||||| || || || ||||| || || | Sbjct 20310011 CCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310070 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| || || ||||| || ||| | |||| || ||||| || || || Sbjct 20310071 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310130 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||||||||||| | || ||||| | || | |||||| | || || Sbjct 20310131 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310190 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || ||||| || || || |||||||| Sbjct 20310191 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310237 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20310251 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20310310 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20310311 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20310370 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20310371 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20310430 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20310431 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310465 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20310479 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20310538 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20310539 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20310598 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20310599 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20310658 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20310659 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310693 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20310707 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20310766 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20310767 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20310826 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20310827 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20310886 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20310887 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310921 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20310935 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20310994 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20310995 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20311054 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20311055 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20311114 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20311115 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311149 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20311163 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20311222 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20311223 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20311282 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20311283 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20311342 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20311343 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311377 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20311391 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20311450 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20311451 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20311510 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20311511 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20311570 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20311571 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311605 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || |||| || || ||||| || || || ||||| || || | | |||||| | Sbjct 20311619 CGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCA 20311678 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || ||||| || ||| | |||| || ||||| || || || || ||||||||| Sbjct 20311679 TCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCTTTG 20311738 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 ||||| | || ||||| | || | |||||| | || || || || || || Sbjct 20311739 TCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 20311798 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || ||||| || || || |||||||| Sbjct 20311799 GTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311833 >seq26 Length=51421553 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| ||||| || ||||||||||| || || | | || | ||| Sbjct 9312802 CAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTACATCCATC 9312861 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| |||||| || | |||| ||||||||| || || ||||| || || || || Sbjct 9312862 TTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCTTATC 9312921 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || || | || || |||||||| | || Sbjct 9312922 CTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGCTCGACCTCAAGAGTGGTGGT 9312981 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCA 29785 || || || | ||| || | || ||||||| Sbjct 9312982 CTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 9313013 >seq11 Length=106225002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/218 (68%), Gaps = 11/218 (5%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA--- 29630 |||||| | |||||| ||||| || ||||||||||| || | |||| ||| Sbjct 47457356 CAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGT------TGGTCAAAGACAT 47457409 Query 29631 --ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 ||| || ||||||||||||||| |||| ||||||||| || || |||| ||| || Sbjct 47457410 CCATCTTCCAGTTGTTTGCCAGCAACGATCAGTCTTTGCTGGTCAGGAGGAACACCTTCC 47457469 Query 29689 TTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTT 29748 || || || | || || ||| |||||| || || | | | || | |||| Sbjct 47457470 TTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCAAGGGCTTGACCTTGAGAGAG 47457529 Query 29749 ATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || || || |||||||| Sbjct 47457530 ATGCTCTTCCCTGTCAAGGTCTTCACGAAAATCTGCAT 47457567 >seq3 Length=120038259 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/221 (69%), Gaps = 9/221 (4%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATG---GTGCGAG 29629 || ||| |||||||| ||||| || ||||||||||| || || | ||| | || | Sbjct 100093970 CAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGCATGTCC--- 100094026 Query 29630 AATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTT 29689 ||| || | || ||||||||| | |||| ||||||||| || || ||||| || || | Sbjct 100094027 -ATCTTCCACGTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTCCT 100094085 Query 29690 TGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 | || || | || | ||| ||||| || || || | || || | ||||| | Sbjct 100094086 TATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGACCTTGAGAGTGA 100094145 Query 29750 TAGTTTTGCCAGTTAAG-GTTTTAACAAATATCTGCATTTT 29789 | || || || || | | || || ||||| |||||||| || Sbjct 100094146 TGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCATCTT 100094186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385078790851887