Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq23 203 2e-46 seq15 136 3e-26 seq6 131 1e-24 seq19 104 2e-16 >seq23 Length=48866549 Score = 203 bits (224), Expect = 2e-46 Identities = 721/1108 (65%), Gaps = 23/1108 (2%) Strand=Plus/Plus Query 281750 CCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACA 281809 ||| ||| ||| ||||| |||| ||||| ||||| ||||| || ||||| || || | Sbjct 22437518 CCATCAA-AATGGCTGCCTGAACTGCAGCCCCATAGGCAACTGCCTCATCGGGGTTGATG 22437576 Query 281810 GTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAAT 281868 | | || || | |||||| || | | || || | | | |||||||| || Sbjct 22437577 CTCTTGTTGAGATCACGACCATTAAAGTAGTCCTGCAACAGCCTCTGA-ACCTTAGGGAT 22437635 Query 281869 ACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATC 281928 |||| || ||||| ||||| ||||| ||||| | | | |||||||| || | ||| Sbjct 22437636 TCGAGTAGAGCCTCCTACTAAGACAATGTCATGGATTTTAGCTTTATCCATCTTGGCATC 22437695 Query 281929 CAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTC 281988 | | | | || || || || || || | ||||||| ||||| ||| | ||||| Sbjct 22437696 CCGAAGAGCCTTCTCCACAGGCTCCAGGGTGCCCCTAAACAGGTCTGCACACAACTCTTC 22437755 Query 281989 GAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACAAAGAATCAACT 282046 || ||||| || || || | || || ||||| |||||| | | || |||| | Sbjct 22437756 AAACCGGGCTCTGGT--GATGGATGTGTAGAAGTCAATGCCTTCGTAAAGTGAGTCAATT 22437813 Query 282047 TCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTT 282106 || | | | || || ||| || || | | || || | ||| || || || | Sbjct 22437814 TCCAAGTTTGCCTGGGTGCTAGATGACAGGGTCCTCTTGGCCCTTTCGCAGGCAGTGCGC 22437873 Query 282107 AGTCTTCGTA-AG---GCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAA 282162 | | | | || |||| | ||| |||| || | |||| ||| |||||||| Sbjct 22437874 AACCGCCTCACAGCCCGCTTGTTCTGGCTGATG----TCCTTCTTATGTTTCCTCTTGAA 22437929 Query 282163 ATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATT 282222 ||||| ||| | | ||||| | || |||||||| || || ||||| | || | Sbjct 22437930 CTCTTCCACAAAGTGGCTCACAAGCCTGTTGTCAAAATCCTCTCCACCCAAGTGGGTGTC 22437989 Query 282223 TCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATG 282282 || | || || | || | |||| ||||| || | | || | | |||||| Sbjct 22437990 CCCAGCTGTGGCCTTAACCTCAAAAATCCCATCATCTATGGTCAGGACGGACACATCAAA 22438049 Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACAT-TCATT-TCTTTGTCTTGGTTTTTATCA 282340 || || ||||||| |||||| || | |||| || || || || | || ||| | | | Sbjct 22438050 TGTGCCTCCACCCAGATCAAAGATCAAGACATGTCGTTCTCCCTGGCCTGCTTTATCT-A 22438108 Query 282341 AGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCA 282400 || ||||| |||| ||||||||||| |||||||| |||||||| | ||||| ||||| Sbjct 22438109 AG-CCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTTAGCACATTGAGACCT 22438167 Query 282401 GCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACA 282460 || || |||||||| || ||||| || | ||| || || || || || || || ||| Sbjct 22438168 GCGATAACACCTGCATCCTTGGTGGCCTGGCGTTGAGAGTCATTGAAGTAGGCTGGCACA 22438227 Query 282461 GTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTA 282520 || || || |||| || || | || | | | || || || | ||||| ||| Sbjct 22438228 GTGATCACAGCATTGGTGACAGTGTAGCCCAAAAATGCCTCAGCAGTCTCCTTCATCTTA 22438287 Query 282521 CTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGGATT--CATTTTGATATG 282578 | | | ||| || || |||| || ||| || | |||| || | |||| || | Sbjct 22438288 GTCAGTACCATAGAAGAGATTTCCTCAGGATAA-AAAGCTTTCTTTTCCCCTTTG-TAGG 22438345 Query 282579 ATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTCATAT 282638 | || | | || || || |||| || |||| || |||||| |||||||| Sbjct 22438346 ACACCATTACCTTGGGCTTGCCTCCTTCATTGATTACTTGGAAAGGCCAAAGTTTCATAT 22438405 Query 282639 CTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAG 282698 ||||||| ||| | |||||||| | ||| || || | ||||| |||||||| | || Sbjct 22438406 CTGATTGCACAACAGGATCATTAAATTTTCTGCCGATCAGACGTTTGGCATCAAAGACAG 22438465 Query 282699 TATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCT 282758 | || ||||| | || | || | ||||| ||||| || || || | ||||| | Sbjct 22438466 TGTTCTGGGGATTCATGGCTACCTGGTTCTTGGCCGCATCGCCGATGAGCCGCTCTGTAT 22438525 Query 282759 CTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAA 282818 | || || | ||||| || || ||||| || || || || || ||||| || || | Sbjct 22438526 CGGTGAAGGCCACATAGCTGGGGGTAGTGCGGTTGCCCTGGTCGTTGGCAATGATCTCCA 22438585 Query 282819 CTTTACCATTTTGCCATACACCTACACA 282846 | || |||| || | || || ||||| Sbjct 22438586 CCTTGCCATGCTGGAACACCCCCACACA 22438613 >seq15 Length=81904557 Score = 136 bits (150), Expect = 3e-26 Identities = 371/561 (66%), Gaps = 14/561 (2%) Strand=Plus/Minus Query 281769 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 281828 || || | ||||| ||||||||||| |||||||| || | | | ||| |||| || | Sbjct 48653835 GATTACCTGCACCGTATGCAACAGCCTCATCAGGGTTGATGCTCTTATTCAGTTCCTTCC 48653776 Query 281829 CATTGAAAAAATTTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCCAACT 281887 ||||||| || | ||||||| ||| | ||| || || || | ||| || ||||| Sbjct 48653775 CATTGAAGAAGTCCTGGAGAAGTT-TCTGAATCTTGGGGATGCGGGTTGAGCCACCAACC 48653717 Query 281888 AATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACG 281947 || ||||| ||||| | ||| || || |||||||| | |||| | |||| || || Sbjct 48653716 AAGACAATATCATGAATCTGAGACTTGTCCAGTTTGGCATCCCGAAGGGCTTTCTCCACA 48653657 Query 281948 GGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGA 282007 || || || | | |||||||| | | | |||||| || || | |||| | Sbjct 48653656 GGGTCCAGGGTGCCACGGAACAAGTCAGCATTCAATTCTTCAAACCGGGCACGGGTAATA 48653597 Query 282008 GTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAA 282067 | | || | || |||||||| | | ||||||| ||||| | | || || Sbjct 48653596 GAGGTATAGAAGTCGATTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTG 48653537 Query 282068 GAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTA-AG---GCTTT 282123 ||||| || | || |||||||| ||||| || || | || | || | || ||| Sbjct 48653536 GAAGAGAGAGTGCGCTTAGCACGCTCACAAGCAGTACGAAGGCGACGGACAGCCCTCTTG 48653477 Query 282124 TGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATG--TT 282181 | || | |||| ||| | || | ||| | |||||| ||| ||| | | ||| | Sbjct 48653476 TTCTCACTGAT----ATCCTTCTTGTGTTTACGCTTGAACTCTGCAATAAA--ATGGTTG 48653423 Query 282182 ACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACT 282241 || | || || ||||| ||||| || ||||| | ||||| ||| | |||| | | || Sbjct 48653422 ACCATGCGGTTGTCAAAGTCTTCTCCACCCAAGTGAGTATCTCCAGCTGTAGATTTGACC 48653363 Query 282242 TGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCA 282301 | || | |||||| |||| || | | | |||||| || |||||||| | |||| Sbjct 48653362 TCAAAGATTCCATCCTCAATAGTGAGGATTGACACATCAAAAGTGCCACCACCTAAATCA 48653303 Query 282302 AAAATAAGTACATTCATTTCT 282322 || || || ||||| ||||| Sbjct 48653302 AAGATCAGCACATTTCTTTCT 48653282 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || | ||||| |||| ||||||||||||||| ||||| || |||| | || Sbjct 48653189 TTTTTGTCTAAGCCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATTCGAAGTACG 48653130 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| |||| |||||||| || || || | || || || || ||||| Sbjct 48653129 TTGAGACCAGCAATAGTTCCAGCATCTTTGGTAGCCTGACGCTGAGAGTCATTGAAATAG 48653070 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||| || Sbjct 48653069 GCAGGTACGGTGACAACAGC 48653050 >seq6 Length=117642375 Score = 131 bits (144), Expect = 1e-24 Identities = 738/1169 (63%), Gaps = 47/1169 (4%) Strand=Plus/Minus Query 281664 TCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAA 281723 |||| | |||||||| ||||| | |||| ||||||||||||||||| | || | Sbjct 87434677 TCATGACTCCACCAGCAGTTTCAATTTCAAGGGAAAGAGGAGTGACATCCAACAGCAGCG 87434618 Query 281724 TATTTTGAAGTTTTTCATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCA 281782 | ||||| |||||| | | ||| |||| ||| ||| | || | ||| |||||| Sbjct 87434617 AGTCTTGAACATTTTCAGATTTGTCTCCAGACAA-AATTGCTACCTGGACAGCTGCACCA 87434559 Query 281783 TATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTT 281842 ||||||| ||| ||| |||| || | | ||| |||| ||| ||| |||| || | Sbjct 87434558 TATGCAAGAGCCTCACCAGGGTTGATGCTCCTATTCAGTTCTTTCCCACTGAAGAAGTCC 87434499 Query 281843 GAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATG 281901 ||||||| ||| | ||| || || | | ||| || || || || ||||| || | Sbjct 87434498 TGGAGAAGTT-TCTGAATCTTGGGGATGCAGGCTGAGCCACCCACCAAGACAATATCGCG 87434440 Query 281902 CACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGC 281961 | ||| || || ||||| || | |||| | |||| || || || || || | Sbjct 87434439 GATCTGAGACTTGTCCAGCTTGGCATCCTGAAGGGCTTTCTCCACAGGGTCCAGGGTGCC 87434380 Query 281962 TCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATC 282021 | ||||| || | | | |||||| ||| | ||| ||| Sbjct 87434379 ACGGAACAAATCAGCATTCAATTCTTCAAATC--------GGAAGT-TGA---------- 87434339 Query 282022 AATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACG 282081 ||||||| | | ||||||| ||||| | | || || ||||| || | || Sbjct 87434338 --TTCCTTCATAGAGGGAATCAATCTCAATACTGGCCTGGGTGCTGGAAGAGAGAGTGCG 87434281 Query 282082 TTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC----TTTTGCTGATTGATTCA 282137 |||||| | ||| | || || | || | | | || || | || | |||| Sbjct 87434280 CTTAGCAAGCTCAGAAGCAGTACGGAGGCAACAGACAGCCCTCTTGTTCTCACTGAT--- 87434224 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTT-ACAAGACGATTATCA 282196 ||| | || ||| |||||||| ||| ||| | | ||| || | ||| ||| Sbjct 87434223 -ATCCTTCTTGCGTTTGCTCTTGAACTCTGCAA-AGAAATGGTTGACCCTGCCATTGTCA 87434166 Query 282197 AAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCT 282256 |||||||| || ||| |||| ||| | ||| | | || | || | || ||| Sbjct 87434165 AAATCTTCTCCAGACAA----GTATCTCCAGCTATAGATTTGACCTCAAAGATTCTATCC 87434110 Query 282257 TCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTC 282316 |||| || || | | |||||| | |||||||| | |||||| || || ||||| Sbjct 87434109 TCAATAGTGAAGACTGACACATCAAAA-TGCCACCACCTAAATCAAAGATCAGCACATTT 87434051 Query 282317 ATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTA 282376 | ||| | ||||| || | ||||| |||| |||||||||| |||||||| | Sbjct 87434050 CTCTCTGCTCCAACCTTTTTGTCTAAGCCATAGGCAATAGCAGCAGCACTTGGTTCACTG 87433991 Query 282377 ATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGT 282436 || ||||| | |||| ||||||||||| ||| |||||||| || || | | || Sbjct 87433990 ATGATTCTAAGTACATGGAGACCAGCAATAGTTCTAGCATCTTTGGTAGCCTCACGCTGA 87433931 Query 282437 GAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAA 282496 || |||||||| | ||||| || || | ||| || | || || || |||| | Sbjct 87433930 GAGTCGTTAAAGCAGGCAGGTACTGTGACAACAGCGTTGGTAACAGTCTTCCCAAGGCAG 87433871 Query 282497 GCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATAT 282556 || ||| ||| ||| | || | | | ||| ||||| | | |||||| || | Sbjct 87433870 GCTTCTGCGATTTCCTTCCTCTTTGTCAGGACCATGGATGACACCTCTTCTGGGTAAAAA 87433811 Query 282557 TGCTTGGATTCATT---TTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 ||| ||| | ||| ||| ||||| || | ||| | | || |||| Sbjct 87433810 CTCTT--TTTCTCTCCCTTG-TATTCTACTTAAACCTTAGGTCTGCCAGCATCATTTGCC 87433754 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 || | || ||||||| |||| |||| || || ||| |||| ||| || || Sbjct 87433753 ACCATGAAGGGCCAATGTTTCGTATCAGACTGGACAACAGCATCATCAAATCTTCATTCA 87433694 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | | |||| |||||||||| | ||||| ||||||| |||| | || || Sbjct 87433693 ATAAGTTGTTTGGCATCAAAAACCATGTTGGTGGGATTAATCATGACTTGGTTCTTTGCA 87433634 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTA 282793 |||| ||||||| | | || | ||||| | ||||| | | ||| || | | Sbjct 87433633 ACATCACCAATCAATCATCCAGTATTAGTAAAAGTGACATA-GCTTGAGGTGGTTCAGTC 87433575 Query 282794 CCTTGATCATTCGCAATAATTTCAACTTT 282822 || |||||||| | ||| ||||| || || Sbjct 87433574 CCCTGATCATTGGAAATGATTTCCACCTT 87433546 >seq19 Length=62516450 Score = 104 bits (114), Expect = 2e-16 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 400297 TGTACCCTAATTTTGACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAAT 400356 ||||| || || ||||||||||||| ||||||||||| || ||| | || |||||| | Sbjct 40292194 TGTACACTTATCCTGACAGAGGGAGACTCAGCTAAAACTTTAGCTGTTTCAGGCCTTGGT 40292135 Query 400357 GTTATTGGAAGAGATTATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGG 400416 || |||| ||||| | ||||| |||||||| |||||||||||| | | ||||| | Sbjct 40292134 GTGGTTGGGAGAGACAAGTATGGGGTTTTCCCTCTTAGAGGAAAAATACTCAATGTACGA 40292075 Query 400417 GATGCTAGTCCTAAA 400431 || ||| || |||| Sbjct 40292074 GAAGCTTCTCATAAA 40292060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3739162092686982