Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq1 174 1e-38 >seq1 Length=157403528 Score = 174 bits (192), Expect = 1e-38 Identities = 686/1067 (64%), Gaps = 53/1067 (5%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | ||| ||| || ||| || || ||| |||| | |||||| | || | Sbjct 110980966 ATGCCTTCTATGTTGCAGACCTGGGA----TTCTGAAGAAACATCTGAGATGGTTGAAAG 110980911 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| |||| || ||||| || || || | | || | || | | | Sbjct 110980910 CTCTTCCTCGGGTCACCCCCTTTTATGCAGTCAAATGCAATGATAGCAGAACCA-TAGTG 110980852 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 ||||| || |||||| || || || |||||||||||||| ||| || || || || Sbjct 110980851 AAGACACTTGCTGCCATTGGGACAGGATTTGACTGTGCCAGCAAGACTGAAATACAATTG 110980792 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | ||| || || | | |||| ||||| | | ||| ||||| ||||| || Sbjct 110980791 ATGCAGAGTCTCGGGGTGCCCCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTG 110980732 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || || | |||||| || | | |||| | ||||||||||||||||||||| Sbjct 110980731 TCTCAGATTAAGTATGCTGCCAATAACAGAGTCCAGATGATGACTTTTGATAGTGAAGTT 110980672 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||||| | ||| ||| | || | | || ||| |||| || ||| Sbjct 110980671 GAGCTGATGAAAGTTGCCAGGGCACATCCAAAGGCCAAGTTGGTTTTGCTGATCGCCACT 110980612 Query 20564 GATGACTCTAACTCAGACAGCATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAGC 20623 ||||| || || ||| | | || |||||||| ||||| || | | || ||||| Sbjct 110980611 GATGATTCCAAAGCAGTCTGTCGCCTCAGTGTCAAATTTGGTGCCACGCTCAAAACCAGC 110980552 Query 20624 CAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCAC 20683 | || | ||||||| ||| | ||| | || || | || |||||||||||| Sbjct 110980551 AGGCTGCTTTTGGAACAGGCAAAAGAGCTAGATATTGATGTCGTTGGTGTCAGCTTCCAC 110980492 Query 20684 GTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAGA 20743 || || |||||||| | ||| | || | | | ||||| |||| ||| | | Sbjct 110980491 GTAGGAAGTGGCTGTACGGATCCTGAGACCTTTGTGCAGGCCATCTCTGATGCCCGCTGT 110980432 Query 20744 GCTTTTGACTTTGGCACGCTGA--TGGGCTTTGACATGTACCTCTTGGATATTGGTGGCG 20801 | |||||| | || |||||| | || || ||||||| || | ||||||||||| | Sbjct 110980431 GTCTTTGACGTGGG--CGCTGAGGTTGGTTTCAACATGTATCTGCTTGATATTGGTGGTG 110980374 Query 20802 GCTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGCAGAAGTCATTA 20858 |||||||| ||||| |||| || ||| | ||||| || || | || || | Sbjct 110980373 GCTTTCCC-GGATC--TGAGGATGTAAAGCTTAAATTTGAAGAGATCACCAGTGTAATCA 110980317 Query 20859 ACGCGGCCTTGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCTG 20918 || | || |||| | | |||||||| || | ||| ||| || | ||| || | Sbjct 110980316 ACCCAGCACTGGACAAGTATTTTCCATCAGACTCTGGAGTGAGAATCATAGCTGAGCCGG 110980257 Query 20919 GCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAAAAA--GTG 20976 |||| ||||| | | | || || | || | || || | | | ||||| ||||| || Sbjct 110980256 GCAGATACTATGTTGCATCAGCTTTCACGCTTGCAGTTAATATTATTGCCAAAAAACTTG 110980197 Query 20977 TGTTGAAG--ACA------CTC-----CTGGAGA---------TAAA---AAGTTTATGT 21011 | || ||| ||| ||| || ||| | || | ||| |||| Sbjct 110980196 TATTAAAGGAACAGATAGGCTCTGATGATGAAGAGGAGTCTAGTGAACGGACGTTCATGT 110980137 Query 21012 ATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTA--ACCATGCTCG 21069 |||| || || ||||| || |||||| || |||||| ||| |||| |||| || | Sbjct 110980136 ATTACGTGAACGATGGAGTATATGGCTCCTTCAACTGC--ATTCTTTACGACCACGCGCA 110980079 Query 21070 TCCTATGCCTATGCTGCTTAAAGAA---AAACGCCTTGAAGACAAAGACTATGTTTCTAG 21126 | |||| | |||| || | | ||| | || || || | ||| || || Sbjct 110980078 CGTGAAGCCTCTTCTGCAGAAGGGACCCAAA---CCAGACGAGAAGTATTATTCATCCAG 110980022 Query 21127 CATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGA 21186 ||| ||||| || | ||| || ||| | || |||||||| ||| ||| | || || || Sbjct 110980021 CATCTGGGGACCGACCTGTGACGGCCTGGACCGCATTGTTGAGCCCTGTAACCTACCCGA 110979962 Query 21187 GCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACA 21233 | | || |||||||| ||| | | ||||| |||||||| ||||||| Sbjct 110979961 GATGCATGTGGGCGATTGGATGCTCTTTGAGAACATGGGTGCTTACA 110979915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463372309271760