Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq17 125 5e-24 >seq17 Length=71137785 Score = 125 bits (138), Expect = 5e-24 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| |||||| || |||||||| || || Sbjct 20311835 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 20311894 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| ||||| | |||||| ||| | || Sbjct 20311895 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 20311954 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || ||| || | ||| || | |||||| || | ||||| Sbjct 20311955 ATGCCTTCTTTTTCTTGGATCTTCACCTTGA-CATTCTCGATGGTGTCACTGGGCTCCAC 20312013 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGT 33752 || | ||||| |||||||| || | || ||||||||||||||||| || Sbjct 20312014 CTCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATTGT 20312064 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | |||| || || ||| ||| || || |||||||| || | Sbjct 20310009 CACCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 20310068 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | | Sbjct 20310069 ACAGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGG 20310128 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || |||||||| || || || | | | || | |||||| || | ||| Sbjct 20310129 GGATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCC 20310187 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || || || || || ||||||||||| Sbjct 20310188 ACCTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310237 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20310239 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310298 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20310299 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310358 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20310359 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20310417 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20310418 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310465 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20310467 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310526 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20310527 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310586 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20310587 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20310645 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20310646 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310693 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20310695 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310754 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20310755 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310814 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20310815 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20310873 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20310874 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310921 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20310923 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310982 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20310983 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311042 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20311043 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20311101 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20311102 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311149 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20311151 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311210 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20311211 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311270 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20311271 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20311329 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20311330 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311377 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20311379 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311438 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20311439 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311498 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20311499 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20311557 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20311558 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311605 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | |||| || |||||| ||| || || |||||||| || || Sbjct 20311607 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311666 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| | |||||| ||| | || Sbjct 20311667 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311726 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || |||||||| || || || | | | || | |||||| || | ||||| Sbjct 20311727 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 20311785 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 20311786 CTCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328584190165440