Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq18 123 6e-23 seq26 114 3e-20 seq17 114 3e-20 seq3 100 7e-16 seq1 98.7 2e-15 seq11 86.0 1e-11 >seq18 Length=67275902 Score = 123 bits (136), Expect = 6e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || |||||| | || || || || || ||| | ||| Sbjct 38084087 AAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCGGATACAATAGAAAAT 38084028 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 38084027 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 38083968 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 38083967 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 38083908 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 38083907 ACTCTTCATCTAGTGTTGAGACTTCG 38083882 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 38083882 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 38083941 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || || ||||| || | ||| || Sbjct 38083942 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 38083985 >seq26 Length=51421553 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||| || || | |||| | || || || || || ||| ||| Sbjct 9312999 AAGACCCTGACAGGGAAGACCACCACTCTTGAGGTCGAGCCCTCGGATACAACAGAAAAT 9312940 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 9312939 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 9312880 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 | || ||||| ||||||||||| | |||||| | || |||||| | || || ||||| Sbjct 9312879 GTTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCC 9312820 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| || || ||||||||||| Sbjct 9312819 ACTCTTCATCTAGTGTTGAGACTTCG 9312794 Score = 89.7 bits (98), Expect = 1e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || |||||||| ||||| || || | || ||||||| |||||| Sbjct 9312794 CGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 9312853 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||| ||||| || | ||||| || | ||| || Sbjct 9312854 CATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTG 9312897 >seq17 Length=71137785 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| || ||||| |||||| |||| ||||| |||| Sbjct 20312058 CAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGTGAC 20311999 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| |||||||||||||| || || ||| || Sbjct 20311998 ACCATCGAGAATGTCAAGGTGAAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAGCAG 20311939 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || | ||||| ||||| || ||| |||||||||| | || || | || |||||| || Sbjct 20311938 AGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATC 20311879 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||||||||| ||||| ||||| || Sbjct 20311878 CAGAAAGAGTCCACTCTGCACCTGGT 20311853 >seq3 Length=120038259 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 206191 CTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAG 206250 || ||||| || || |||||| | | || || || || ||| | ||| |||| | Sbjct 100094161 CTGACAGGGAAGACCATCACTCTCAAGGTCGAGCCCTCGGATACAATAGAAGATGTAATG 100094102 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 ||||| || || || ||||||||| || ||| |||||||| ||||| || || Sbjct 100094101 GTCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTTGCTGGC 100094042 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 ||||| ||||||||||| ||||| | || |||||| | || || ||||| |||||| Sbjct 100094041 AAGCACGTGGAAGATGGACATGCTTTGTCTGACTACAACATTCAAAAGGAGTCCACTCTT 100093982 Query 206371 CACCTTGTTTTGAGACTT 206388 || | || ||||||||| Sbjct 100093981 CATTTAGTGTTGAGACTT 100093964 >seq1 Length=157403528 Score = 98.7 bits (108), Expect = 2e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || | || ||| ||||| | || ||| |||||||| ||||| Sbjct 45884852 GTAAAGGCCAAGATCCAGGGTAAGGAACGAATTCTTCCTGACCACCAAAGACTGATCTTT 45884793 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| || |||||| | || || ||| | Sbjct 45884792 GCTGGCAAGCAACTGGAAGATGGATGTACTTTGTTTGACTACAACATTCAAAAGGAGCCC 45884733 Query 206365 ACTCTTCACCTTGTTTTGAGACTT 206388 ||||||| ||||| ||||||||| Sbjct 45884732 ACTCTTCCTCTTGTGTTGAGACTT 45884709 >seq11 Length=106225002 Score = 86.0 bits (94), Expect = 1e-11 Identities = 99/132 (75%), Gaps = 6/132 (5%) Strand=Plus/Plus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| ||||| ||| |||||||| || || |||||||| ||||| Sbjct 21255680 GTAAAGGCCAAGATCCAAGATAAAAAAGGAATTCCTCCCGATCAGCAAAGACTGATCTTT 21255739 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| |||||||||||| | ||||| || ||||| | || || ||||| Sbjct 21255740 GCTGGCAAGCAATTGGAAGATGGATGTACTTT----GACTACAA--TGCAAAAGGAGTCC 21255793 Query 206365 ACTCTTCACCTT 206376 |||||| ||||| Sbjct 21255794 ACTCTTTACCTT 21255805 Score = 84.2 bits (92), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||| || || ||| |||||||| ||| | Sbjct 47457492 GTAAAGGCCAAGATCCAGGATAAGGAAGGTGTTCCTCCTGACCAGCAAAGACTGATCGTT 47457433 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || || |||||||||| | | ||||| || | |||||| | || || ||||| Sbjct 47457432 GCTGGCAAACAACTGGAAGATGG-ATGTCTTTGACCAACTACAACATTCAAAAGGAGTCC 47457374 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| |||||| ||| Sbjct 47457373 ACTCTTCATCTTGTGCTGAGACGTCG 47457348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181367945843347