Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq23 107 6e-20 seq29 104 7e-19 seq15 104 7e-19 seq17 98.7 3e-17 seq13 98.7 3e-17 seq12 98.7 3e-17 seq7 98.7 3e-17 seq30 91.5 5e-15 seq19 91.5 5e-15 seq9 89.7 2e-14 seq20 84.2 7e-13 seq18 84.2 7e-13 seq24 82.4 2e-12 seq16 82.4 2e-12 seq5 82.4 2e-12 seq3 78.8 3e-11 >seq23 Length=48866549 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 18887906 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 18887965 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 18887966 TCCCGGGTTTCGGC 18887979 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 19765430 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 19765371 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19765370 CCGGGTTTCGGC 19765359 Score = 102 bits (112), Expect = 3e-18 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 19776214 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 19776273 Query 2827 CCCCGGGCTTCAGC 2840 || ||| ||| || Sbjct 19776274 TCCTGGGTTTCGGC 19776287 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 19792616 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 19792557 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19792556 CCGGGTTTCGGC 19792545 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 19814782 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 19814723 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19814722 CCGGGTTTCGGC 19814711 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 19896682 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 19896623 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 19896622 CCGGGTTTCGGC 19896611 Score = 93.3 bits (102), Expect = 1e-15 Identities = 64/71 (90%), Gaps = 1/71 (1%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCA 2825 |||||||| |||||||| ||||| || ||||||||||||||| ||||||||||||||||| Sbjct 19786888 TGGCTGAAATAGCTCAGCTGGGACAGAATTAGACTGAAGATCTTAAAGGTCCCTGGTTCA 19786947 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 19786948 ACCCCAGGTTT 19786958 Score = 84.2 bits (92), Expect = 7e-13 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||||||| ||||||||||| ||||| |||||||||| |||||||||| |||||||||| Sbjct 19623215 GGCTGAAATAGCTCAGTTGAGAGAGTGTTAGACTGAAAATCTAAAGGTGCCTGGTTCAAT 19623156 Query 2828 CCCGGGCTT 2836 ||| || || Sbjct 19623155 CCCAGGTTT 19623147 Score = 80.6 bits (88), Expect = 8e-12 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||||||| |||||||| ||||||||||| |||||||||||||||||||| | Sbjct 15679397 GCCGAAACAGCTCAGCTGGGAGAGTGTTAGACTGAAGGTCTAAAGGTCCCTGGTTCAATC 15679456 Query 2829 CCGGGCTTC 2837 | ||| ||| Sbjct 15679457 CTGGGTTTC 15679465 >seq29 Length=51332696 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 36446539 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 36446598 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 36446599 CCGGGTTTCGGC 36446610 >seq15 Length=81904557 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 731197 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 731256 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 731257 CCGGGTTTCGGC 731268 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 736666 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 736725 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 736726 CCGGGTTTCGGC 736737 Score = 102 bits (112), Expect = 3e-18 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || |||||| |||||||||| ||||||| ||||||||||||||||||||||||||||||| Sbjct 1425990 ATAGCTGAAATAGCTCAGTTAGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 1425931 Query 2826 ACCCCGGGCTT 2836 | |||||| || Sbjct 1425930 ATCCCGGGTTT 1425920 >seq17 Length=71137785 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 20324559 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 20324500 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 20324499 CCGGGTTTCGGC 20324488 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| ||| |||| |||||||| ||||||||||||||||||||||||||||||| Sbjct 19601634 TGGCCGAAATAGTTCAGCTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAG 19601575 Query 2827 CCCCGGGCTTCAGC 2840 |||||| |||||| Sbjct 19601574 TCCCGGGTTTCAGC 19601561 >seq13 Length=83034183 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | Sbjct 11258186 GCTGAAGTAGCTCTGTTGGGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAATC 11258127 Query 2829 CCGGGCTTCAGC 2840 | ||| ||| || Sbjct 11258126 CTGGGTTTCGGC 11258115 Score = 82.4 bits (90), Expect = 2e-12 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||| |||||| ||||||| |||||||||||||| |||||||| ||| | Sbjct 6452311 AAATAGCTCAGTTAGGAGAGTGTTAGACTACAGATCTAAAGGTCCTTGGTTCAATCCCAG 6452252 Query 2833 GCTTCAGC 2840 |||||||| Sbjct 6452251 GCTTCAGC 6452244 >seq12 Length=87277232 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 17011210 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 17011269 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 17011270 CCGGGTTTCGGC 17011281 >seq7 Length=108433636 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 66676668 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 66676727 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 66676728 CCGGGTTTCGGC 66676739 >seq30 Length=66011198 Score = 91.5 bits (100), Expect = 5e-15 Identities = 55/58 (95%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||| Sbjct 51389282 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGG 51389339 Score = 87.8 bits (96), Expect = 6e-14 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| | |||||||||||||||||| ||||||||||||||||||| |||||||||||| Sbjct 51401294 GCTGGAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGCTCCCTGGTTCAA 51401351 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 |||| | |||||||||||||||||||||| ||||||||||||||||||||||||| | | Sbjct 51385558 GCTGGAAAAGCTCAGTTGGGAGAGCATTAGCCTGAAGATCTAAAGGTCCCTGGTTCGATC 51385617 Query 2829 CCGGG 2833 || || Sbjct 51385618 CCAGG 51385622 Score = 86.0 bits (94), Expect = 2e-13 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 |||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||| || | Sbjct 51390594 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTACAGGTCCCTGCTTCAATCCCAGGTT 51390653 Query 2836 TCAGC 2840 |||| Sbjct 51390654 CCAGC 51390658 Score = 86.0 bits (94), Expect = 2e-13 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCT 2835 || ||||||||||||||| |||||||||||||||||||||||||||||| | ||| |||| Sbjct 51395581 TAACTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCAGGCT 51395640 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGG 2833 |||||||||||||||||| || ||||||||||||||||||||||||||| | || ||| Sbjct 51389959 TAGCTCAGTTGGGAGAGCTTTGGACTGAAGATCTAAAGGTCCCTGGTTCGATCCTGGG 51390016 Score = 80.6 bits (88), Expect = 8e-12 Identities = 47/49 (96%), Gaps = 0/49 (0%) Strand=Plus/Plus Query 2776 TAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 |||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 51388108 TAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCGGGTTC 51388156 >seq19 Length=62516450 Score = 91.5 bits (100), Expect = 5e-15 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||| ||||| ||||||||||||||| || |||||||||||||||| ||||||||||||| Sbjct 7190630 ATGACTGAAATAGCTCAGTTGGGAGCGCCTTAGACTGAAGATCTAGAGGTCCCTGGTTCG 7190571 Query 2826 ACCCCGGGCTTCAGC 2840 | || | | |||||| Sbjct 7190570 ATCCTGCGTTTCAGC 7190556 >seq9 Length=91568626 Score = 89.7 bits (98), Expect = 2e-14 Identities = 58/64 (91%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||| ||||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 40870688 AAATAGCTCAGATGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTTGATCCCGG 40870629 Query 2833 GCTT 2836 | || Sbjct 40870628 GTTT 40870625 >seq20 Length=71784255 Score = 84.2 bits (92), Expect = 7e-13 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||||| ||||||| || ||||| |||||||||||||||||||||||||||||| | Sbjct 48630232 TGGCTGAAATAGCTCAACTGCGAGAGTGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGA 48630291 Query 2827 CCCCGGGCTTCAGC 2840 || || |||||| Sbjct 48630292 TTCCAGGTTTCAGC 48630305 >seq18 Length=67275902 Score = 84.2 bits (92), Expect = 7e-13 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 ||||| ||| ||||||| ||||||| |||| |||||||||||||||||||||||||| Sbjct 25241295 ATGGCCGAAATAGCTCAACCGGGAGAGTGTTAGTCTGAAGATCTAAAGGTCCCTGGTTCA 25241354 Query 2826 ACCCCGGGCTT 2836 ||||| || || Sbjct 25241355 ACCCCAGGTTT 25241365 >seq24 Length=62310066 Score = 82.4 bits (90), Expect = 2e-12 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||||| |||||||||||||||| |||| ||||||||||||||||||||||||||| Sbjct 7205650 GCTGAAATAGCTCAGTTGGGAGATAATTATGCTGAAGATCTAAAGGTCCCTGGTTCAA 7205707 >seq16 Length=79370172 Score = 82.4 bits (90), Expect = 2e-12 Identities = 61/70 (87%), Gaps = 1/70 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGA-TCTAAAGGTCCCTGGTTCAAC 2827 |||||| ||| | |||||||||| || ||||||||| | |||||||||||||||||||| Sbjct 71563415 GCTGAAATAGGTTAGTTGGGAGAACAATAGACTGAAAAATCTAAAGGTCCCTGGTTCAAT 71563474 Query 2828 CCCGGGCTTC 2837 |||||| ||| Sbjct 71563475 CCCGGGTTTC 71563484 >seq5 Length=119020588 Score = 82.4 bits (90), Expect = 2e-12 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||| |||||||||||| ||||||||||||||||||| | ||| Sbjct 53923179 AAATAGCTCAGTTGGGAGACTGTTAGACTGAAGACCTAAAGGTCCCTGGTTCAATCTCGG 53923120 Query 2833 GCTTC 2837 | ||| Sbjct 53923119 GTTTC 53923115 >seq3 Length=120038259 Score = 78.8 bits (86), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 5/78 (6%) Strand=Plus/Plus Query 2733 AGCATGATACAATGACATC-TTTGTACT-GTGTTTA---TGGCTGAAGTAGCTCAGTTGG 2787 ||||| || | | ||||| |||||| | ||||||| |||||||| |||||||||||| Sbjct 31269362 AGCATTATTCTTTTACATCATTTGTAGTTGTGTTTAAAGTGGCTGAAATAGCTCAGTTGG 31269421 Query 2788 GAGAGCATTAGACTGAAG 2805 |||||||||||||||||| Sbjct 31269422 GAGAGCATTAGACTGAAG 31269439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15844415472015