Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1 288 1e-72 seq24 156 5e-33 seq16 145 9e-30 seq22 131 2e-25 >seq1 Length=157403528 Score = 288 bits (318), Expect = 1e-72 Identities = 255/319 (80%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 |||||||||||||||| || | |||||||||||| || || || | | |||||| ||| Sbjct 56875433 GTGGTGACCCAGGATGTAAGAGGGCTGCTGAACACACCTGCTTCTTTAAGATGCTCTCTG 56875492 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | ||||| || ||||||| || ||||| ||||||||| | | ||||| Sbjct 56875493 CAAAATCCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAA 56875552 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||||| || | ||| | |||| ||||| || |||||||| || || ||||||||| Sbjct 56875553 AACATGATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAG 56875612 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 ||||||||||||||||| |||||| ||||||||||| ||||| |||||||||||||| Sbjct 56875613 ATAAACATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTG 56875672 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||| ||| ||||| ||||||||||| |||||||| ||||| || ||||| || Sbjct 56875673 GAAGATGAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGA 56875732 Query 171372 GTGGCCTGCCTCACCCTCT 171390 | ||||||||||| |||| Sbjct 56875733 ATAGCCTGCCTCACTCTCT 56875751 Score = 188 bits (208), Expect = 8e-43 Identities = 208/277 (75%), Gaps = 0/277 (0%) Strand=Plus/Plus Query 171393 GTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCACCTGT 171452 || |||||||| || ||||| || |||||||| | ||| || ||||| || |||| || Sbjct 56878334 GTACAGCCCACAGTATTTCTTCACTATAAATTATCTGAAGATCACCTAAATGTCACTTGC 56878393 Query 171453 TCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAATTGAA 171512 ||||||||||| ||||| | ||| ||| | ||||| | || ||||||| ||||| Sbjct 56878394 TCTGCCAATGCTCGCCCAGCCCCTATGATCTCCTGGAAAGTCTCTGGGTCAGGGATTGAG 56878453 Query 171513 AACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTACTCCAA 171572 ||||||| | || | | || || | |||||||| || ||||| | ||| | ||||| Sbjct 56878454 AACAGTACCAAGATCGTCTCACACCCCAATGGAACAACATCTGTCATCAGCATCCTCCAG 56878513 Query 171573 GTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACCTGGGA 171632 | |||||||||||||| ||| |||| ||||| || |||||||| ||| |||||||| Sbjct 56878514 ATCAAAGACCCCAAGAGACAGGTGGGGAAGGATGTGATCTGCCAGGTGCTACACCTGGGG 56878573 Query 171633 AATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 | ||| || ||| ||||||||||| | ||| |||| Sbjct 56878574 ACTGTGACCGACTACAGGGAAACTGTGAACAAAGGTA 56878610 >seq24 Length=62310066 Score = 156 bits (172), Expect = 5e-33 Identities = 145/184 (79%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||| | || | ||| || | ||||||||||||||| | ||||||||| || ||||| Sbjct 35898652 CTTCAGGTCCGTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAA 35898593 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || |||||||||||||| ||||||| ||||||| |||||| || |||||||| | Sbjct 35898592 GGGCACACCCAGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATT 35898533 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| |||||| || || || |||||| || || || | Sbjct 35898532 CACCACGTAGAACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATCTGA 35898473 Query 147162 GGGG 147165 |||| Sbjct 35898472 GGGG 35898469 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| ||||||||||||||||| || || || |||| || || ||||| Sbjct 35896269 GCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTGTTG 35896210 Query 147343 GAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCC 147402 ||||||||| | | | || || ||||||||| ||| ||||| || ||||||| Sbjct 35896209 GAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCC 35896150 Query 147403 TTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCC 147435 |||| || || ||||||| || ||||| ||| Sbjct 35896149 TTGGAAGACAGTTCCTTAGCGTTGGTGGATCCC 35896117 >seq16 Length=79370172 Score = 145 bits (160), Expect = 9e-30 Identities = 131/167 (78%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| || ||||| ||||||||| |||||||||||| Sbjct 3914878 AGGGTTACCTGGGTTGCCAAGCCTTGTCGGAAATGATCCAGTTTTACCTGGAGGAGGTGA 3914819 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| ||||| ||||| || || || ||||| |||||||| || |||| Sbjct 3914818 TGCCACAGGCTGAGAACCA------------TGGGCCTGACATCAAGGAGCACGTGAACT 3914771 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| ||||| |||||||| | || |||||||||| ||| Sbjct 3914770 CGCTGGGGGAGAAGCTGAAGACCCTCCGGCTGCGGCTGCGGCGCTGT 3914724 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| | |||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 3912564 AGCTCCAAGAGAGGGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3912505 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||| | ||||||||||| || ||| Sbjct 3912504 TAGAATCCTACATGACAACGAAGATG 3912479 >seq22 Length=60283066 Score = 131 bits (144), Expect = 2e-25 Identities = 212/304 (70%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| ||||| || || |||| || | ||||||| ||||| | | |||||| Sbjct 53156502 GTACTCCCTGGTATTCATGATTGGCCTGCTGGGCAATGTAGTGGTGGTGGTGATCCTCAC 53156443 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| | || ||||||||||||| |||| ||||| ||||| || ||| Sbjct 53156442 AAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCCATTTCTGA 53156383 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||| | | |||| || || || |||||||||| | || |||| | Sbjct 53156382 TGTGCTCTTCCTAGTCACGCTGCCATTCTGGATTCACT--ATGTTAGGTGGAA----AGA 53156329 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | |||||||||||||||||| | || || | || ||| |||| Sbjct 53156328 GTGGGTTTTTGGCCACCACATGTGTAAGTTGCTCTCCGGGCTCTATTACATGGGCTTGTA 53156269 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || |||||||| ||||| | ||| ||||||| || | || |||| Sbjct 53156268 CAGCGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTCCACGC 53156209 Query 8910 GGTG 8913 ||| Sbjct 53156208 CGTG 53156205 Score = 114 bits (126), Expect = 2e-20 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||||||| | |||| || || ||||| ||| ||| |||| |||||||| Sbjct 53251860 GTACTCGGTGGTGTTTGTCATTGGCCTGATCGGCAACATCCTAGTGGTCCTGGTCCTCAT 53251919 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||||||||| | |||||||| ||||| ||| ||||||||||| || ||| Sbjct 53251920 GCAATACAAGAGGCTCAGAAGCATGACCAGCATCTACCTCCTCAACCTGGCCATTTCTGA 53251979 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 ||| | | | ||||| || ||||| ||||| Sbjct 53251980 CCTCATCTTCCTCTTCACGCTGCCCTTCTGGAT 53252012 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| ||| |||||||| |||||||||| Sbjct 53155789 TGGACCTGGCCATGCTGGTGACCGAGGTGATCGCCTACACGCACTGCTGTGTCAACCCCG 53155730 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 | ||||| || || || || || | ||||| Sbjct 53155729 TGATCTATGCCTTCGTTGGTGAGAGGTTCC 53155700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583269870304800