Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq19 111 1e-19 seq18 107 2e-18 seq26 89.7 5e-13 >seq19 Length=62516450 Score = 111 bits (122), Expect = 1e-19 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32928842 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32928901 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | | Sbjct 32928902 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACATT 32928961 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 32928962 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32929021 Query 35725 AAATATCTGCATTCTG 35740 || || |||||| || Sbjct 32929022 GAAGATTTGCATTTTG 32929037 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32928158 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAA 32928217 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 32928218 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32928277 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 32928278 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32928337 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 32928338 GAAGATCTGCAT 32928349 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||||||||| | | || || | || ||||||||||| || ||||| Sbjct 32928614 CTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 32928673 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 32928674 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32928733 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | |||||||||| ||||| || || || |||| || ||||| Sbjct 32928734 CTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32928793 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 32928794 GAAGATCTGCAT 32928805 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || |||||||| | | || || | || ||||||||||| || ||||| Sbjct 32928386 CTCCTTCTGGATATTGTAATCAGAAAGAGTGCGACCATCTTCCAGCTGCTTGCCGGCAAA 32928445 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| |||||| ||||| | Sbjct 32928446 GATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 32928505 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||||| ||||| || || || |||| || ||||| Sbjct 32928506 CTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 32928565 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 32928566 GAAGATCTGCAT 32928577 >seq18 Length=67275902 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | || |||||||||||||||||| || | | Sbjct 38083876 CCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 38083935 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | |||||||| | |||| Sbjct 38083936 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGA 38083995 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | || || | || ||| Sbjct 38083996 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACC 38084055 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || ||||| | || ||||| || |||||||| Sbjct 38084056 TCAAGAGTGATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCAT 38084102 >seq26 Length=51421553 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 35504 TTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAA 35563 ||| |||||||||| | |||||||| | ||| | || |||||||||||||||||| Sbjct 9312782 TTAGTTCCACCACGAAGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAG 9312841 Query 35564 TCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCC 35623 || | ||| || | | || ||||| ||||| || |||| |||| | |||||||| Sbjct 9312842 TCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAACAAAGATCAGTCTTTGCTGGTCA 9312901 Query 35624 GAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGAT 35683 | ||||| | ||||| ||| |||||| ||| | | || | || || | Sbjct 9312902 GGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTTGTATCCGAGGGC 9312961 Query 35684 TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCA 35735 || ||||| | ||| | || || || |||| || |||| || ||||||| Sbjct 9312962 TCGACCTCAAGAGTGGTGGTCTTCCCTGTCAGGGTCTTCATGAAAATCTGCA 9313013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450625076447560