Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq17 123 3e-23 seq18 102 8e-17 seq19 87.8 2e-12 seq3 82.4 8e-11 >seq17 Length=71137785 Score = 123 bits (136), Expect = 3e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| || || || ||||||||||| Sbjct 20311835 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 20311894 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| ||||| | |||||| || || || Sbjct 20311895 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGG 20311954 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||||||||| || || ||||| || | ||||| | ||||| Sbjct 20311955 ATGCCTTCTTTTTCTTGGATCTTCACCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 20312014 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 || ||||| ||||||||||| || | || || || || || |||||| Sbjct 20312015 TCCAGAGTGATGGTTTTACCAGTGAGGGTCTTTACAAAGATCTGCATT 20312062 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20310239 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310298 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20310299 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310358 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20310359 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310418 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20310419 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310465 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20310467 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310526 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20310527 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310586 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20310587 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310646 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20310647 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310693 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20310695 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310754 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20310755 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310814 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20310815 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310874 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20310875 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310921 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20310923 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310982 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20310983 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311042 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20311043 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20311102 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20311103 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311149 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20311151 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311210 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20311211 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311270 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20311271 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20311330 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20311331 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311377 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20311379 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311438 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20311439 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311498 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20311499 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20311558 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20311559 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311605 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||||||| || | || ||||| || ||||| ||||| || ||||||||||| Sbjct 20311607 CCACCTCTGAGGCGGAGGACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20311666 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20311667 AGGGTGCGCCCATCCTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20311726 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20311727 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20311786 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20311787 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20311833 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| || | |||| || ||||| || ||||| ||||| || ||||||||||| Sbjct 20310011 CCTCCCCTCAAGCGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 20310070 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || |||||||| || ||||| |||| | |||||| || || || Sbjct 20310071 AGGGTGCGCCCATCTTCCAGCTGTTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 20310130 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| ||||| ||||| || || ||||| || | ||||| | ||||| Sbjct 20310131 ATGCCCTCTTTGTCTTGGATCTTGGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 20310190 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || || || || ||||| || ||||| Sbjct 20310191 TCCAGGGTGATGGTCTTGCCCGTCAAGGTCTTCACGAAGATCTGCAT 20310237 >seq18 Length=67275902 Score = 102 bits (112), Expect = 8e-17 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| || || || ||||| |||||||||||||||||||| | ||| || | Sbjct 38083885 AGTCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGTACG 38083943 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | ||||| || || || || ||||| Sbjct 38083944 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 38084003 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | ||| || || | || || || ||||| Sbjct 38084004 CTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGCTCGACCTCAAGAGT 38084063 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || |||| || || |||||||| ||||| ||| Sbjct 38084064 GATGGTCTTCCCCGTTAGGGTCTTCACGAAAATCTGCATCTTG 38084106 >seq19 Length=62516450 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || || | || ||||| || || || ||||| || |||||||| || | Sbjct 32928807 CCACCCCTCAGACGGAGAACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAATCAGAA 32928866 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||| ||||| || | | |||||| || || || Sbjct 32928867 AGAGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCAGGGGGA 32928926 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | ||||| | ||||| Sbjct 32928927 ATGCCTTCCTTATCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCACTGGGCTCCACC 32928986 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| |||||||||||| Sbjct 32928987 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATTTGCATTTTG 32929037 >seq3 Length=120038259 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| |||||| | || || ||||| |||||||||||||||||||| | ||| | || Sbjct 100093965 AGTCTCAACACTAAATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAA-AGCATG 100094023 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || | || ||||| ||||| |||| | ||||| || || || || ||||| Sbjct 100094024 TCCATCTTCCACGTGCTTGCCAGCAAAGATCAGTCTTTGCTGGTCAGGAGGAATTCCTTC 100094083 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || | || | || | ||| || || | || || | |||||| Sbjct 100094084 CTTATCCTGGATCTTGACCATTACATCTTCTATTGTATCCGAGGGCTCGACCTTGAGAGT 100094143 Query 134675 AATGGTTTTACCGGTTA-AAGTTTTAACGAAAATTTGCATTTTG 134717 ||||| || || || | ||| || || ||||| ||||| ||| Sbjct 100094144 GATGGTCTTCCCTGTCAGGAGTCTTCACAAAAATCTGCATCTTG 100094187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505209463125640