Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq27 118 8e-22 seq11 107 2e-18 seq19 91.5 1e-13 seq14 86.0 5e-12 >seq27 Length=44709034 Score = 118 bits (130), Expect = 8e-22 Identities = 297/445 (67%), Gaps = 16/445 (4%) Strand=Plus/Minus Query 77241 TCGCTCCCTCTCGTGCCAGCCGGTCGGCCTCCTCATTGCCTTTGTATCCTGCGTGTCCTG 77300 |||| || |||| || || | ||| |||| || |||||| | |||||| || || | Sbjct 36828110 TCGCACCTTCTCTCGCTAGTCTGTCCCCCTCTTCGTTGCCTCTAAATCCTGAATGGCCAG 36828051 Query 77301 GGATGTGCAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCAT 77360 | | |||| ||| || |||| || || | ||||||| | |||||| | Sbjct 36828050 GAACATGCATCCACTGAATGTCCATGCCCCGCGCCAGCCGCTCCAGCTCCGCAAAGTCCT 36827991 Query 77361 CCTTGTTGA-CAACTGACCCTCCGCCATGCAG--CCTCCAGCCGTTCTGCTTCCAGTTCT 77417 |||| ||| || || ||||| | ||| | ||||||||| |||||||||||| || Sbjct 36827990 CCTTATTGGTCACCT---CCTCC-CGGTGCTGGTCCTCCAGCCATTCTGCTTCCAGCCCT 36827935 Query 77418 TAACCCACTTAGTCACACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCT 77477 | ||||| | || | |||||| |||||||||| ||||||| |||||||| Sbjct 36827934 TCACCCAGGT-GTGATGCCATTG-------ACATGCTGTCCGTGTAGAGAACCAGCTTAG 36827883 Query 77478 TGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGGATGCAGCCTGGATTTCAGCGCGCT 77537 |||| | | ||| |||||| | | ||||| || || || || || || || | | Sbjct 36827882 TGATGTCCTGAGCCTTAGCTTGCTCGATGGCTTT-GAGGCTGCATGAATCTCCGCCCTTT 36827824 Query 77538 GGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACATTAAGCGGGTGATTATAACCCCAAT 77597 ||||||| |||||||| ||||| | | ||||| | || || ||||| | Sbjct 36827823 GGTTTGTTTGTTGCCCAGGAAGTCTAATTCCTACATTTAAGGGATGGCCTGGTCCCCAGT 36827764 Query 77598 ATACGCCAATGCCAGCTCGGGCTTGTTTCTGTCCGTTTGATAAGCAACAGCCGTCAGTGT 77657 | |||| || | || || || | | ||||| |||| ||||||||||||| Sbjct 36827763 ACACGCTGATTCTTGCGCGAGCCCTCTCGCGCCCGTTACTGGAGCAGCAGCCGTCAGTGT 36827704 Query 77658 AGACCACCACGGCGTCACCCATGTA 77682 |||| ||||| | ||| |||||||| Sbjct 36827703 AGACAACCACAGAGTCCCCCATGTA 36827679 >seq11 Length=106225002 Score = 107 bits (118), Expect = 2e-18 Identities = 96/118 (81%), Gaps = 2/118 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| ||||||||||| |||||| || || || ||||| ||||| || |||||||| Sbjct 87091604 CGGTTTAGCCAAGAAGTTCAGATTACC-GAGGCTCGTTGTTTCTATGGCTTCCAAATTGC 87091546 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| |||||| Sbjct 87091545 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAAGAT 87091488 Score = 105 bits (116), Expect = 5e-18 Identities = 93/116 (80%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | ||||||||||| |||||||| || || |||||| Sbjct 87089933 GGAGAACGTGTGGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCG 87089874 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGA 44238 | ||||| ||| | ||||||||||| |||||||||| | |||||||| ||||| Sbjct 87089873 TCTATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGA 87089818 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 44489 GTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTT 44548 ||| |||| || ||||| ||||||||||||||||| |||| || || || ||||| ||| Sbjct 87088301 GTAGAAAATCCATTTGACTTTATGGAAAATATTTCACTGGAGGGGAAGACTAACTTCTTT 87088242 Query 44549 GAAAAACGCGTTGGAGAATATCAGCGAATGGGCGTCATG 44587 || || | || || || |||||| ||||||| || ||| Sbjct 87088241 GAGAAGAGAGTAGGCGAGTATCAGAGAATGGGAGTGATG 87088203 >seq19 Length=62516450 Score = 91.5 bits (100), Expect = 1e-13 Identities = 117/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Minus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 45127209 AACAGTGGTTTGCACATCATCATCTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 45127150 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | || || ||||||||||||||||| || || ||||| ||| | Sbjct 45127149 AGCATGGCTGGTAGCACAGGGGTTCATGACACTGTTGTCAACCAGCTGCTGTCCAAAATT 45127090 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 45127089 GATGGCGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 45127048 >seq14 Length=94672733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || || || |||||||| || ||||| | Sbjct 20015746 AAAATCCCTTTGATTTTATGGAAAACATTTCCTTAGAGGGGAAAACAAATTTCTTTGAGA 20015687 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| ||| |||||||| Sbjct 20015686 AACGAGTTTCAGAGTATCAGCG 20015665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397311130641535