Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq11 84.2 2e-11 >seq11 Length=106225002 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/134 (76%), Gaps = 4/134 (3%) Strand=Plus/Minus Query 59980 AACGTCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-C 60037 ||||| | |||| ||||| ||| |||||||| |||||||| || || || || || | | Sbjct 87089929 AACGTGTGGTAGCCTTTGC-TGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTT-TGCGTC 87089872 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||||||||| || || || || ||||| ||||| | || ||||| || || || Sbjct 87089871 TATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACGTTTTCCAATGAACTTAT 87089812 Query 60098 TTCCCGGGACGAGG 60111 | | | ||||||| Sbjct 87089811 TAGCAGAGACGAGG 87089798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548319740860080