Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 6e-14 >seq10 Length=101087560 Score = 93.3 bits (102), Expect = 6e-14 Identities = 193/284 (68%), Gaps = 10/284 (4%) Strand=Plus/Plus Query 14268 TGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTAC 14327 ||| || | ||||| || ||||||||||| ||||| ||||||||| | ||| | || | Sbjct 52495447 TGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCG--TGCTC 52495504 Query 14328 G--GGACGCCCGGGGGGATCCCCGTTCACGTCAAGTACGACACCTCGGACATGTGGGCCA 14385 ||| ||| || || ||| ||| |||||| ||| ||| |||||| |||| Sbjct 52495505 CATGGATGCCTGGCTCTATTCCCTACCACCCCAAGTATCACATCTCAGACATGACTGCCA 52495564 Query 14386 AGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACC 14445 | |||| | ||||||||||| | ||||||| ||| ||| | ||||| | || Sbjct 52495565 TCGCCAGGCTGGTCAAGTGGCAGGGCCACGAGGGAGATGTCAGCATGGGGGCACCTTATG 52495624 Query 14446 CGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGT 14505 | || ||| || ||||| | ||||||||||| | ||| |||| ||| || | | Sbjct 52495625 CACCCTGCTCTGGAATCCATCAGCGGGCCATCTGCATTTATGGGGCCGGGGACCTGCACT 52495684 Query 14506 GG---CTGAAGAGCGTCCCGCACCTGTTCGCCAACAAGTTCGAC 14546 || || ||| || ||||| || || |||||||| ||| Sbjct 52495685 GGATTCTCCAGA---ACCATCACCTCTTGGCAAACAAGTTTGAC 52495725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658492938584320