Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq19 118 9e-22 seq17 107 2e-18 seq18 82.4 7e-11 >seq19 Length=62516450 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 32928805 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 32928746 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 32928745 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 32928686 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 32928685 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 32928626 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| || ||||||| || Sbjct 32928625 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGGTAT 32928576 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || || || || Sbjct 32928577 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCCAGT 32928518 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 32928517 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 32928458 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| || || |||| |||||||| Sbjct 32928457 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGTCGCACTCTTTCTGATTACAAT 32928398 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| || ||||||| || Sbjct 32928397 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGGTAT 32928348 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || |||||||||||| | || || || || ||||| || Sbjct 32929033 ATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 32928974 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 32928973 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 32928914 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || ||||||| | || |||| ||||||||| Sbjct 32928913 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 32928854 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| | ||| || ||||||| || Sbjct 32928853 ATCCAGAAGGAGTCGACCCTGCACCTGGTTCTCCGTCTGAGGGGTGGTAT 32928804 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || || ||||| || Sbjct 32928349 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 32928290 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| || || || || || || || |||||||| || || || || Sbjct 32928289 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAG 32928230 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| ||||||||| Sbjct 32928229 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTACAAC 32928170 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || |||| | ||| | |||||||| Sbjct 32928169 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTTCGTCTTAGGGGTGGC 32928122 >seq17 Length=71137785 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20310237 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310178 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20310177 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20310118 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 20310117 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 20310058 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || |||||||| ||| | || |||| |||| ||| |||| || Sbjct 20310057 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGCTTGAGGGGAGG 20310011 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| |||||||| || || || || || | || ||||| || ||||| || Sbjct 20312061 ATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAGT 20312002 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||| ||||||||||| || || || || Sbjct 20312001 GACACCATCGAGAATGTCAAGGTGAAGATCCAAGAAAAAGAAGGCATCCCCCCAGACCAG 20311942 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| ||||| ||||||| | ||| | || || |||||| Sbjct 20311941 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAAC 20311882 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || ||||| || Sbjct 20311881 ATCCAGAAAGAGTCCAC 20311865 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20310465 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310406 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20310405 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20310346 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20310345 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20310286 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20310285 ATCCAGAAGGAGTCCAC 20310269 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20310693 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310634 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20310633 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20310574 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20310573 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20310514 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20310513 ATCCAGAAGGAGTCCAC 20310497 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20310921 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20310862 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20310861 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20310802 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20310801 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20310742 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20310741 ATCCAGAAGGAGTCCAC 20310725 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20311149 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311090 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20311089 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20311030 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20311029 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20310970 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20310969 ATCCAGAAGGAGTCCAC 20310953 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20311377 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311318 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20311317 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20311258 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20311257 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20311198 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20311197 ATCCAGAAGGAGTCCAC 20311181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20311605 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311546 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20311545 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20311486 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20311485 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20311426 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20311425 ATCCAGAAGGAGTCCAC 20311409 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || || || || ||||| || Sbjct 20311833 ATGCAGATCTTCGTGAAGACCTTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCCAGT 20311774 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || |||| ||||| || || ||||||||||| ||||| || || || || Sbjct 20311773 GACACCATCGAGAACGTCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAG 20311714 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| ||||| |||| || | ||| | || || |||||| Sbjct 20311713 CAGAGGCTGATCTTTGCCGGGAAACAGCTGGAGGATGGGCGCACCCTGTCTGACTACAAC 20311654 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || |||||||| || Sbjct 20311653 ATCCAGAAGGAGTCCAC 20311637 >seq18 Length=67275902 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || || || ||| | || |||||||| || || || || Sbjct 38084102 ATGCAGATTTTCGTGAAGACCCTAACGGGGAAGACCATCACTCTTGAGGTCGAGCCCTCG 38084043 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || || || || || || ||||| || || || || || Sbjct 38084042 GATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGACCAG 38083983 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || | || || |||||| Sbjct 38083982 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAC 38083923 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 |||||||||||||| || | ||| | || ||| | | || |||||| Sbjct 38083922 ATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACTTCGTGGTGGC 38083875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434755811192640