Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq24 192 5e-44 >seq24 Length=62310066 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||||||||| ||||| |||||||| |||||| |||||||||| |||||||| | |||| Sbjct 35898476 GATCTCCCTCTCATGGCCCTCCCCCCATGCCACGCCCTCTGCCAGTTCTACGTGGTGAAT 35898535 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 |||||||||||||||||| | || ||||| |||||||||||||| | || ||||| ||| Sbjct 35898536 GGGGAGCTGTCCTGCCAGTTGTACCAACGGTCGGGAGACATGGGCCTGGGTGTGCCCTTC 35898595 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 || ||||| || ||||| |||||||| ||||||||||| || Sbjct 35898596 AATATTGCCAGCTACGCCCTGCTCACCTACATGATCGCACA 35898636 Score = 192 bits (212), Expect = 5e-44 Identities = 139/161 (86%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| |||||||| ||||| || ||||| ||||| ||||| || | ||| Sbjct 35898636 TGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCCAGGCCC 35898577 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||| ||||| || | |||||||||||||||||||||| | |||||||| ||| Sbjct 35898576 ATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAGAACTGG 35898517 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| |||||||| ||||| ||||||||||| Sbjct 35898516 CAGAGGGCGTGGCATGGGGGGAGGGCCATGAGAGGGAGATC 35898476 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| ||| | ||||| || || ||| ||| ||||| || ||||| || ||||||| | Sbjct 35896122 CCACCAACGCTAAGGAACTGTCTTCCAAGGGAGTGAAAATTTGGGATGCCAACGGGTCCC 35896181 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTC-CCATCTCGGGAGGAGGGCGACTTGGGCCCGGTC 34411 ||||||| |||| ||| ||| ||| | | | |||| || ||||||||||| Sbjct 35896182 GAGACTTCTTGGATGGCTTGGGCTTCTCCAACAGAGCTGAAGGG-GATTTGGGCCCGGTT 35896240 Query 34412 TACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 || || ||||||||||| || |||||||| || || Sbjct 35896241 TATGGCTTCCAGTGGAGGCATTTTGGGGCTGAATA 35896275 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/155 (74%), Gaps = 2/155 (1%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || ||||||||||| || |||| | | Sbjct 35896275 TATTCAGCCCCAAAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATC-CCCTTCAGC 35896217 Query 6959 CGAGATGG-GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | ||| ||| ||| |||| |||||||| ||||||| || ||||| || || Sbjct 35896216 TCTGTTGGAGAAGCCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTT 35896157 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 ||| ||| ||| || || ||||| | ||| |||| Sbjct 35896156 CACTCCCTTGGAAGACAGTTCCTTAGCGTTGGTGG 35896122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448094822705040