Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8 246 3e-60 seq1 183 3e-41 seq5 122 7e-23 seq24 113 4e-20 >seq8 Length=112672867 Score = 246 bits (272), Expect = 3e-60 Identities = 390/555 (70%), Gaps = 7/555 (1%) Strand=Plus/Minus Query 2140 CTAAACTGTATTGCAGCTGTCTCTGAAAATATGGGCATTGGAAACAAGGGAAAACTGCCA 2199 |||||||| || |||| || | || |||||||| || || || || || ||||| Sbjct 25016892 CTAAACTGCATCATCACTGTGTCCCAGAACATGGGCATCGGCAAGAACGGGAACCTGCCC 25016833 Query 2200 TGGCCTCCTCTTAAAAATGAATTTAAACATTTTCAAAAAATGAC----ATCTTCTTCCAC 2255 ||||| || || | |||||||| || |||| |||| |||||| |||| |||| Sbjct 25016832 TGGCCACCACTCAGGAATGAATTCAAGTATTTCCAAAGAATGACTATAATCT-CTTCAGA 25016774 Query 2256 TGACTTAAAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAA 2315 || ||||||||| | || |||||||| || ||||| ||||| || |||| || Sbjct 25016773 AGAAGGTAAACAGAATTTGGTGATTATGGGTAGGAAGACCTGGTTCTCCATTCCAGAGAA 25016714 Query 2316 AAGCAGGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACC 2375 | | | ||| || ||||||| ||| | |||||||||||| | || || || || || Sbjct 25016713 GAATCGACATTTAAAGGACAGAATTAATATAGTTCTCAGTAGAGAACTCAAGGAACCTCC 25016654 Query 2376 ACGTGGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACC 2435 | || ||||| ||| |||| |||||| | ||| | || | ||| ||| || || Sbjct 25016653 AAAGGGAGCTCATTTTCTTGCCAAAAGTTTGGATGATGCCTTAGAACTTACTGAAGATCC 25016594 Query 2436 AGAATTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGA 2495 |||||||| | | | || || | | |||||||| | || || || ||||| ||| |||| Sbjct 25016593 AGAATTAACAAATAAAGTAGACATGGTTTGGATAGTGGGAGGCAGTTCTGTTTATAAGGA 25016534 Query 2496 GAGCATTA-CAAGATCTTGCAAACAGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTG 2554 ||| | |||| | || | | | || ||| | |||||||| ||||| |||||| Sbjct 25016533 AGCCATGAACAAGC-CAGGCCATCTTAGACTATTTGTGACAAGGATCATGCAAGAATTTG 25016475 Query 2555 AATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTC 2614 || ||||| | |||||||||||| || || ||||| |||| ||| | |||| || Sbjct 25016474 AAAGTGATGTGTTTTTCCCAGAAATTGATTTTGAAAAATATAAACTTCTTCCAGAATATC 25016415 Query 2615 CAGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATG 2674 |||||||||| | | || || || ||||| || |||| ||||||||||| |||||| Sbjct 25016414 CAGGTGTTCCTTTGGATGTCCAGGAGGAAAAAGGCATTAAGTACAAATTTGAAGTATATG 25016355 Query 2675 aaaaaaaaaCATAAT 2689 |||| || | |||| Sbjct 25016354 AAAAGAACAATTAAT 25016340 >seq1 Length=157403528 Score = 183 bits (202), Expect = 3e-41 Identities = 194/256 (76%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || |||||| | ||||| |||||||||||| | || || |||||||||||||||| Sbjct 56875499 CCCCAGGAAGTTTTGATTGTGACATGGCAAAAAATCAAGGCTGTAAGCCCAGAAAACATG 56875558 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 ||| | || | |||| |||||||| || ||||| || ||||| || || || ||| Sbjct 56875559 ATCACCTACAGCGAGAACCATGGGGTTGTAGTCCAGCCTGCCTACAAGGACAAGATAAAC 56875618 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || |||| ||||| ||| |||| || || |||||||| || || ||||| ||| Sbjct 56875619 ATCACCCAGCTGGGACTCATGAACTCAACCATTACTTTCTGGAATACCACCTTGGAAGAT 56875678 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || | ||| |||||||| | ||||| || ||||| ||||| ||||| |||||||||| Sbjct 56875679 GAGGCGTGTTACAAGTGCCTCTTTAATACCTTTGGTTCTGGAAAGATCTCAGGAATAGCC 56875738 Query 1515 TGTCTAACCCTTTTTG 1530 || || || || |||| Sbjct 56875739 TGCCTCACTCTCTTTG 56875754 >seq5 Length=119020588 Score = 122 bits (134), Expect = 7e-23 Identities = 289/425 (68%), Gaps = 20/425 (5%) Strand=Plus/Minus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTT-CACTTCCCATTAAAAGCA- 2320 ||||||||| | || || ||||| || ||||| ||||| |||| ||| ||||| | Sbjct 39194269 AAACAGAATTTGGTGATAATGGGTAGGAAGACGTGGTTCAACACT--CCAG-AAAAGAAT 39194213 Query 2321 -GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAAAGAGCCACCACGT 2379 | |||| || | ||||| ||| | |||||| |||| | || || || || || | Sbjct 39194212 CGATCTTTAAAAGAAAGAATTAATATAATTCTCAATAGAGAACTCAAGGAACCTCCCCAG 39194153 Query 2380 GGGGCTCACTTTGTTGCAAAAAGTATAGATCACGCTCTGGAAATTATAATAGGACCAGAA 2439 || ||||| ||| |||| |||||| | ||| | ||| | ||| |||| | ||||| | Sbjct 39194152 GGAGCTCATTTTCTTGCCAAAAGTCTGGATGATGCTTTAGAACTTATCGTGCAACCAGCA 39194093 Query 2440 TTAAAAGACAGGGTGGATAAGATTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGC 2499 |||| | | | | |||| | |||| ||| | || | || ||| | | |||| ||| Sbjct 39194092 TTAACAAATAAACTAGATATGGTTTGAATAGTAGGAAGCAGTTCTAT---TAAGGA-AGC 39194037 Query 2500 ATT--ACAAGATCTTGCAAAC--AGATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGA 2555 || ||||| | || | | |||| | ||| | ||| ||| ||||| ||||||| Sbjct 39194036 CTTGAACAAGC-CAGGCCATCTTAGAT--TATTTGTGGCAATAATTATGCAAGAATTTGA 39193980 Query 2556 ATGTGATACATACTTCCCAGAAATTAATCTTACCAAATACAAACAACTTACTGAATTTCC 2615 | ||||| ||| || | ||||| | || | || || |||| || | |||| ||| Sbjct 39193979 AAGTGATGCATTTTTTCTAGAAAATGATTTGGAAAATTATAAACTTCTCCCAGAATATCC 39193920 Query 2616 AGGTGTTCCCTCTGCCGTGCAAGAAGAAAATGGAATTAGATACAAATTTGAGATATATGa 2675 ||||||||| ||| | || || || || | |||| ||||||||||| || | || Sbjct 39193919 AGGTGTTCCTTCT---ATCCAGGAGGAGAAAGTCATTAAGTACAAATTTGAAGTAAAAGA 39193863 Query 2676 aaaaa 2680 ||||| Sbjct 39193862 AAAAA 39193858 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 2462 TTTGGATAATTGGTGGAAGATCTGTCTATGAGGAGAGCATTA-CAAGATCTTGCAAACAG 2520 |||||||| | || ||||| ||||||| |||| ||| | |||| | || | | Sbjct 47527850 TTTGGATAGTGGGAGGAAGTTCTGTCTGCAAGGAAGCCATAAACAAGC-CAAGCCATCTT 47527792 Query 2521 ATGCTGTTTTTAACAAGGATTCTGCAAAAATTTGAATGTGATACATACTTCCCAGAAATT 2580 | || ||| | |||||||| |||| || ||||| ||||||||| || ||||||||| Sbjct 47527791 AGACTATTTGTGACAAGGATCATGCAGGAACTTGAAAGTGATACATTTTTTCCAGAAATT 47527732 Query 2581 AATCTTACCAAATACAAACAACTTACTGAATTTCCAGGTGTTCCCTCTGCCGTGCAAGAA 2640 || | || || |||| || | |||| |||||||||||| |||| || || || Sbjct 47527731 GATTTGGAAAAGTATAAACTTCTCCCAGAATATCCAGGTGTTCCTTCTGATGTCCAGGAC 47527672 Query 2641 GAAAATGGAATTAGATACAAATTTGAGATATATGaaaaaaaaaCATAAT 2689 ||||| || | || ||||||||||| ||||||||| || | |||| Sbjct 47527671 GAAAAAGGCACTAAGTACAAATTTGAAGCATATGAAAAGAACAATTAAT 47527623 >seq24 Length=62310066 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | || ||||| |||||||||||||| || || ||||||||| Sbjct 61770506 GTGGTGGAGGAGCTCTTCAGGGACGGGGTGAACTGGGGGCGCATCGTGGCCTTCTTTGAG 61770447 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || || || || ||||||||||| |||||||| | | || | |||| || |||| | Sbjct 61770446 TTCGGAGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAGC 61770387 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 61770386 ATCGCCCTGTGGATGACCGA 61770367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414325726703548