Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq24 129 5e-25 seq8 98.7 8e-16 seq7 87.8 1e-12 >seq24 Length=62310066 Score = 129 bits (142), Expect = 5e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 29720 GTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCG 29779 |||| ||| || |||||||| ||||| || | ||||||||| || || |||||||| || Sbjct 35898642 GTGATGTGTGCGATCATGTAGGTGAGCAGGGCGTAGCTGGCAATATTGAAGGGCACACCC 35898583 Query 29780 AGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTCACGTAA 29839 || |||||||| || |||| ||||| | |||||| || ||||| || | |||||| Sbjct 35898582 AGGCCCATGTCTCCCGACCGTTGGTACAACTGGCAGGACAGCTCCCCATTCACCACGTAG 35898523 Query 29840 AACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 ||||| || | ||| ||||| || || |||||||||||| Sbjct 35898522 AACTGGCAGAGGGCGTGGCATGGGGGGAGGGCCATGAGA 35898484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || ||||| |||| || || || | |||| |||| Sbjct 35896263 AAATGCCTCCACTGGAAGCCATAAACCGGGCCCAAATCCCCTTCAGCTCTGTTGGAGAAG 35896204 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||| ||||||| ||| |||||||| ||||| || || || ||||| Sbjct 35896203 CCCAAGCCATCCAAGAAGTCTCGGGACCCGTTGGCATCCCAAATTTTCACTCCCTTGGAA 35896144 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || || || || | ||| ||||| || Sbjct 35896143 GACAGTTCCTTAGCGTTGGTGGATCC 35896118 >seq8 Length=112672867 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/240 (70%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || || ||||| |||| || | ||||| | Sbjct 25016641 ATGAGCTCCCTTTGGAGGTTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 25016700 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | | ||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 25016701 TAAATGTCGATTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATT 25016760 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGAAAGTGTTTAAAATCTTTGCA 114441 ||| |||||| || ||||| | |||| | | || | || || || || | Sbjct 25016761 CTGTTTACCTTCTTCTGAAGAGATTATAGTCATTCTTTGGAAATACTTGAATTCATTCCT 25016820 Query 114442 AAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCT-GGACAC 114499 ||| || |||| ||||| | ||||| || |||||||||||| ||| |||||| Sbjct 25016821 GAGT------GGTGGCCAGGGCAGGTTCCCGTTCTTGCCGATGCCCATGTTCTGGGACAC 25016874 >seq7 Length=108433636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || || ||||| |||| || | ||||| | | ||||| |||||| || || Sbjct 29819286 TTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGA 29819227 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||| ||||| |||||||| ||||||| ||||| |||||| Sbjct 29819226 ATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 29819179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406015156940602