Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2 134 1e-26 seq30 113 4e-20 seq11 107 2e-18 seq14 86.0 5e-12 >seq2 Length=136510947 Score = 134 bits (148), Expect = 1e-26 Identities = 127/162 (78%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || | || Sbjct 16802084 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGTGGC 16802143 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | ||||| ||||||| |||||||| || || || || || ||||| |||||| Sbjct 16802144 TCCTCGTTCTGGCTTGGCAGCAAAACACTTCATAGATGTAGGAGCTGGTGTCATAGATGA 16802203 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||| ||||||||||| ||||| |||| |||||||||||||| Sbjct 16802204 AGATTATAGAGGAAATGTTGGTGTTGTCTTGTTTAATTTTGG 16802245 >seq30 Length=66011198 Score = 113 bits (124), Expect = 4e-20 Identities = 208/302 (69%), Gaps = 6/302 (2%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 || ||| || ||||| || ||||| || | | ||||| |||||||| ||| || || Sbjct 54378529 AGTGCTTGTGAAAACTGACATTCAGATAGCCCTTCCTTCTGGGTGCTATGGAAGAGCGGC 54378588 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 |||| | || | ||||||| |||||||| || || || | || ||||| |||||| Sbjct 54378589 TCCTCGTGCTAGCTTGGCAGCAAAACACTTCATAGATGTAGAAGCTGGTGTCATAGATGA 54378648 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| ||| || | | || Sbjct 54378649 AGATTATAGAGGAAATGTTGGTGTTGTCCTGTTTAATTTTGGCAAAGAGAAGT-TTGAAG 54378707 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAAT 32001 | |||||||| ||| | | || | || ||||| ||| ||| || |||| Sbjct 54378708 --TCAAAAAGGGTGATCGAATTGCATAGCTCATTTGTGAATGGATATTTTACCCAGAAAT 54378765 Query 32002 AGAAGTAGCTAATTATCTAGATTGCACGAAAAGAGGCGCTAAAGGCTTTGGATCTACCGG 32061 ||| | || | | | ||||| ||| |||| || | ||||||||| || || || Sbjct 54378766 AGACGAAGTTCAAATTTTAGATGACACTGAAAGGGGTTCAGGAGGCTTTGGTTCCACTGG 54378825 Query 32062 AA 32063 || Sbjct 54378826 AA 54378827 >seq11 Length=106225002 Score = 107 bits (118), Expect = 2e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 |||||||||||||| ||||| || |||||||| | || ||||| | |||| || || Sbjct 87089800 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 87089859 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||||| ||||| || || |||||||| |||||||| || || ||||| ||| Sbjct 87089860 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 87089919 Query 4692 AC 4693 || Sbjct 87089920 AC 87089921 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| |||||||| || || || |||||||||||||||||||| ||||| || ||| Sbjct 87091489 TCTTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCA 87091548 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 || || || || || || || | ||| || || | |||||||| Sbjct 87091549 ATTTGGAAGCCATAGAAACAACGAGCCTCGGTAATCTGAACTTC 87091592 >seq14 Length=94672733 Score = 86.0 bits (94), Expect = 5e-12 Identities = 98/131 (75%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 4920 CAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAA 4979 |||||||| || || ||||| || || || || ||||||||||||||||| || || Sbjct 20031220 CAAAATCTC---ACCAAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAG 20031276 Query 4980 ACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTA 5039 | ||||| ||||| |||| || || | || || || |||||||| || | ||| || Sbjct 20031277 ATGTGAGAGATAAAATACTTCTCTTCCGATTTGAGCTTGTTCCAGTGAGGAAGATCCTTT 20031336 Query 5040 GTTAAATCAAC 5050 | ||||||||| Sbjct 20031337 GATAAATCAAC 20031347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426893944024031