Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq15 132 7e-26 seq2 120 4e-22 seq30 102 1e-16 seq11 91.5 2e-13 >seq15 Length=81904557 Score = 132 bits (146), Expect = 7e-26 Identities = 109/133 (82%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 32351239 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 32351180 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| |||||||| || |||||||| |||||||| ||||| || || | | |||||| Sbjct 32351179 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 32351120 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 32351119 TTTCTTATACCAT 32351107 Score = 113 bits (124), Expect = 6e-20 Identities = 130/175 (74%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 78739 CATCACTAAATAGtttttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTA 78798 || |||| |||| ||| || ||||| ||||| | ||||| || || || ||||| || | Sbjct 32326719 CACCACTGAATACTTTCTTGGTTTCTTTGTGCAAGTTAGAGACTGCAATCCTTGCTGCCA 32326660 Query 78799 GAATAGCATAATCAGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCCGCTAAAATAT 78858 | || ||||||||||| || | ||||| | || || ||| | || || || ||| ||| Sbjct 32326659 GGATGGCATAATCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAAAGTAT 32326600 Query 78859 CTAACTCTATAGTTGTGACCCCATTATATAGTCCTTGAATAACTTTCATGGCGAT 78913 | | || | ||| ||||||||| | |||| ||||| || |||||||||| ||| Sbjct 32326599 CCAGTTCCACAGTAGTGACCCCACTGTATAAGCCTTGGATTACTTTCATGGTGAT 32326545 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 32330979 GTACCAGCATTGAAGAGAGTGGGAGAGGCATGGGTAAACCACTTCTCAGAAAGAAGGTTG 32330920 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || ||||||||||| | || || || || ||||| || || | ||| | ||||||| Sbjct 32330919 TAGGTTTCAATAGCAGCATCAATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 32330860 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 || || || ||||||||| || Sbjct 32330859 ATGTGTTGTGGTCTTTCAGCC 32330839 >seq2 Length=136510947 Score = 120 bits (132), Expect = 4e-22 Identities = 242/354 (68%), Gaps = 15/354 (4%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCTTGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCCTT 45935 ||||||||| ||||| ||| | | |||||||| |||||| | ||| ||||||| Sbjct 16802381 TCCAGTGGAACCAAAGCCTCCGGAACCCCTTTCAGTGTCATCTAAAATTTGAACTTCCTC 16802322 Query 45936 CAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTTAT 45995 || || ||| |||| |||| | | || || || || ||| ||||||| | || | Sbjct 16802321 TGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGCAATTTGATCACCCTTTTTGAC 16802262 Query 45996 TTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCTTC 46055 |||||| | ||||| ||| ||| | || | || |||| | |||||||||||||| Sbjct 16802261 TTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACCAACATTTCCTCTATAATCTTC 16802202 Query 46056 ATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGAGC 46112 |||||| || || |||| ||||| || |||| | || ||||| | |||||| Sbjct 16802201 ATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGCTGCCAAGCCAGAACGAGGAGC 16802142 Query 46113 TATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATC 46168 | ||||||||| ||||| || | | ||| |||| || ||||| | ||| | Sbjct 16802141 CACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAAGC 16802087 Query 46169 TCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCC 46220 ||||||||| || || | || || || || |||||||| | ||||| || Sbjct 16802086 -ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACTGTACAGGTCATAGCC 16802034 >seq30 Length=66011198 Score = 102 bits (112), Expect = 1e-16 Identities = 244/362 (67%), Gaps = 19/362 (5%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 ||||||||| ||||| ||| ||| | | |||||||| |||||| | ||| ||||| Sbjct 54378826 TCCAGTGGAACCAAAGCCTCCTGAAC--CCCTTTCAGTGTCATCTAAAATTTGAACTTCG 54378769 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || || ||| |||| | || | | || || | || |||| ||||||| | || Sbjct 54378768 TCTATTTCTGGGTAAAATATCCATTCACAAATGAGCTATGCAATTCGATCACCCTTTTTG 54378709 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| ||| | ||| | || |||| | |||||||||||| Sbjct 54378708 ACTTCAAACTTCTCTTTGCCAAAATTAAACAGGACAACACCAACATTTCCTCTATAATCT 54378649 Query 46054 TCATCTATTACTCCCCCTCCCACATC---GATACCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || || | ||||| || |||| | || | || | |||| Sbjct 54378648 TCATCTATGACACCAGCTTCTACATCTATGAAGTGTTTTGCTGCCAAGCTAGCACGAGGA 54378589 Query 46111 GCTATTCTTCCATA----ACAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 || ||||||||| ||||| || | | ||| |||| || ||||| | ||| Sbjct 54378588 GCCGCTCTTCCATAGCACCCAGAA----GGAAGGGCTATCTGAATGTCAGTTTTCA-CAA 54378534 Query 46167 TCTCCTTTCTCCA--GGAGGGATAGTATAGTCGTACGCACTGTATAAATCATATCCTGCT 46224 | ||||||||| || || | || || || || |||||||| | || || || || Sbjct 54378533 GC-ACTTTCTCCATTGGTGGTACTGTGTAATCATAGGCACTGTACAGCTCGTAGCCCGCG 54378475 Query 46225 GC 46226 || Sbjct 54378474 GC 54378473 >seq11 Length=106225002 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 47835 GACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCT 47894 ||||| ||||||||| | ||||| || || || | ||||| || || ||||| || || Sbjct 87088201 GACATCACTCCCATTCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 87088260 Query 47895 TCCAATGATATATTTTCCATAAAATCAAATGGATT 47929 |||| ||| |||||||||||||| ||||||||||| Sbjct 87088261 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATT 87088295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694409106752480