Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq15 136 6e-27 seq14 107 3e-18 seq2 95.1 2e-14 seq11 89.7 7e-13 >seq15 Length=81904557 Score = 136 bits (150), Expect = 6e-27 Identities = 110/133 (83%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| |||||||| || ||||||||||| ||||| | || Sbjct 32351239 TGAAATTCTCCTGACAAGACTCTGCGAGTGTAGATGTTACTGGTATAAGGTTCAATGGAC 32351180 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| |||||||| || ||||||||||||||||| ||||| || || | | |||||| Sbjct 32351179 TCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAACTG 32351120 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 32351119 TTTCTTATACCAT 32351107 >seq14 Length=94672733 Score = 107 bits (118), Expect = 3e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | || || ||||| ||||| |||||||| ||||| | || | Sbjct 20026063 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 20026122 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 20026123 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 20026182 Query 46772 CGAC 46775 | || Sbjct 20026183 CCAC 20026186 >seq2 Length=136510947 Score = 95.1 bits (104), Expect = 2e-14 Identities = 213/315 (68%), Gaps = 15/315 (5%) Strand=Plus/Minus Query 44402 ATCTAGAGATTGTACTTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGC 44461 ||||| | ||| ||||||||| || || ||| |||| |||| | | || || || || Sbjct 16802342 ATCTAAAATTTGAACTTCCTCTGTTTCTGGGTAAAATATCCGTTCACAAATGAGCTGTGC 16802283 Query 44462 TATTCTATCACCTGTATTTATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCC 44521 ||| |||||| | || | || ||| | ||||| ||| ||| | ||| | || || Sbjct 16802282 AATTTGATCACCCTTTTTGACTTCAAACTTCTCTTTGCCAAAATTAAACAAGACAACACC 16802223 Query 44522 AATGTTCCCCCTATAATCTTCATCTATTACTCCACCTCCCACATCAAT---ACCTTTTAG 44578 || || || ||||||||||||||||| || ||| |||| ||||| || |||| Sbjct 16802222 AACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCTATGAAGTGTTTTGC 16802163 Query 44579 AGAAAGACCCGATCTAGGCGCTATTCTTCCATA----ACAGAATTTTGGCATAGACATAC 44634 | | || || | ||| || | ||||||||| ||||| || | | || Sbjct 16802162 TGCCAAGCCAGAACGAGGAGCCACTCTTCCATAGCACCCAGAA----GGAAGGGCTATCT 16802107 Query 44635 GAATATCTGTTTTAATCAACCGTCTTTCTCCA--GGAGGGATAGTATAATCGTAAGCACT 44692 |||| || ||||| | ||| | ||||||||| || || | || ||||| || ||||| Sbjct 16802106 GAATGTCAGTTTTCA-CAAGC-ACTTTCTCCATCGGTGGTACTGTGTAATCATAGGCACT 16802049 Query 44693 GTATAAATCATATCC 44707 ||| | ||||| || Sbjct 16802048 GTACAGGTCATAGCC 16802034 >seq11 Length=106225002 Score = 89.7 bits (98), Expect = 7e-13 Identities = 103/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 46284 TTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 46340 ||| |||||| |||| || | ||| ||| ||| | |||||| ||||||||| | Sbjct 87088158 TTAGAAGTCGGCATCCAAGGTAAAGGAATTCTCTGTCGGACTTGACATCACTCCCATTCT 87088217 Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 || || || ||||| | ||||| || || ||||| || || |||| ||| |||||||| Sbjct 87088218 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTC 87088277 Query 46401 CATAAAATCAAACGGATT 46418 |||||| ||||| ||||| Sbjct 87088278 CATAAAGTCAAATGGATT 87088295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712667878386240