Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capra_20hircus_20[refseq_20GCF_5F001704415.1_202016-08-24] 29,907 sequences; 2,922,813,246 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq11 93.3 4e-14 seq24 82.4 8e-11 seq17 82.4 8e-11 >seq14 Length=94672733 Score = 107 bits (118), Expect = 2e-18 Identities = 98/124 (79%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 23531 CTTCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTT 23590 ||||||| || || || | ||||| ||||| || | ||| ||||| | ||||| ||| | Sbjct 20026063 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCAGGCATGAGTCCTCTTTTCT 20026122 Query 23591 TAATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGG 23650 | | ||| ||||| |||||||| ||||| || |||||||| || || ||||| ||||||| Sbjct 20026123 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 20026182 Query 23651 CCAC 23654 |||| Sbjct 20026183 CCAC 20026186 >seq11 Length=106225002 Score = 93.3 bits (102), Expect = 4e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 || || || ||||| | |||||| ||||| || | || ||||| | ||||||||| || Sbjct 87089800 TCGTCTCTGCTAATAAGTTCATTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 87089859 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||| | ||||| || ||||||||||| || || || || || |||||||| Sbjct 87089860 AGCCAGAATATAGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 87089919 Query 23653 ACAAGACGT 23661 || | |||| Sbjct 87089920 ACCACACGT 87089928 >seq24 Length=62310066 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 8390 CACTGCAACCTCCGCCTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCT 8449 ||||||| ||| |||| | | |||||| || |||| | |||||||||| |||||||| Sbjct 15601484 CACTGCAGCCTAGAACTCCTGAGCTCAAGCGATCCTCCAGTCTCAGCCTCCCGAGTAGCT 15601425 Query 8450 GGGATTACAGGCAAAAGCCACCA 8472 |||| |||||||| ||||||||| Sbjct 15601424 GGGACTACAGGCACAAGCCACCA 15601402 >seq17 Length=71137785 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 8405 CTCCCGGGTTCAAGCTATTCTCCTGCCTCAGCCTCCAGAGTAGCTGGGATTACAGGCAAA 8464 |||| ||| |||||| ||||||| ||||||||||| |||||||||||| ||| || | | Sbjct 8004876 CTCCTGGGCTCAAGCGATTCTCCACCCTCAGCCTCCTGAGTAGCTGGGACTACGGGTACA 8004935 Query 8465 AGCCACCACGCCAAGCTAA--TTTTTG 8489 |||||| ||| |||||| |||||| Sbjct 8004936 CGCCACCGAGCCCAGCTAAGCTTTTTG 8004962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521293048229800