Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq28392 118 1e-21 seq85459 82.4 8e-11 >seq28392 Length=738 Score = 118 bits (130), Expect = 1e-21 Identities = 270/399 (68%), Gaps = 8/399 (2%) Strand=Plus/Plus Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG- 16757 || |||||||| || ||||| || || ||||| ||||| || ||||| ||||| || Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 16758 CTGAAAATATTT-TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATA 16816 ||| ||| || || || ||||| || || | |||||| || || || || || Sbjct 61 CTGCAAACCTTGCTAAAG---CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATG 117 Query 16817 TATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAA 16876 || || ||| || ||| ||||| || || || || || || || ||||| | Sbjct 118 TACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGG 177 Query 16877 AATCGTTGCTCTATAACAACCGC-TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGG 16935 || || ||||| ||| || || | || | || | ||| | || || || Sbjct 178 AACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTA-CTCTCTGTTCCGAAGG 236 Query 16936 TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCT 16995 | | || || ||||| ||||| || || || || || || || || ||||| ||||| Sbjct 237 TTTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCT 296 Query 16996 GCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAA 17055 ||| |||||||| | ||||| || | || |||||| |||||||||||| | ||| || Sbjct 297 GCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAA 356 Query 17056 TATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094 ||||| || || || || |||||||| || || || || Sbjct 357 TATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395 >seq85459 Length=10496 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| || || || || |||||||| || |||||||| |||||||| || || Sbjct 6853 ATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 6794 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || ||||||||||| | || |||||||| Sbjct 6793 AAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 497565034017480