Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 118 1e-21
seq85459 82.4 8e-11
>seq28392
Length=738
Score = 118 bits (130), Expect = 1e-21
Identities = 270/399 (68%), Gaps = 8/399 (2%)
Strand=Plus/Plus
Query 16700 AAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATTAG-TAG- 16757
|| |||||||| || ||||| || || ||||| ||||| || ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 16758 CTGAAAATATTT-TAGAGTACCCCAGTTCGGCGATTAATCTATCCGCTACAAATTCTATA 16816
||| ||| || || || ||||| || || | |||||| || || || || ||
Sbjct 61 CTGCAAACCTTGCTAAAG---CCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATG 117
Query 16817 TATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAA 16876
|| || ||| || ||| ||||| || || || || || || || ||||| |
Sbjct 118 TACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGG 177
Query 16877 AATCGTTGCTCTATAACAACCGC-TTCCTTAATAATACTAGCAACTCGTTCCTCGGACGG 16935
|| || ||||| ||| || || | || | || | ||| | || || ||
Sbjct 178 AACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTA-CTCTCTGTTCCGAAGG 236
Query 16936 TGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCT 16995
| | || || ||||| ||||| || || || || || || || || ||||| |||||
Sbjct 237 TTTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCT 296
Query 16996 GCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAA 17055
||| |||||||| | ||||| || | || |||||| |||||||||||| | ||| ||
Sbjct 297 GCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAA 356
Query 17056 TATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGAC 17094
||||| || || || || |||||||| || || || ||
Sbjct 357 TATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395
>seq85459
Length=10496
Score = 82.4 bits (90), Expect = 8e-11
Identities = 77/98 (79%), Gaps = 0/98 (0%)
Strand=Plus/Minus
Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293
|| || ||||| || || || || |||||||| || |||||||| |||||||| || ||
Sbjct 6853 ATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 6794
Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331
|| || || || ||||||||||| | || ||||||||
Sbjct 6793 AAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 497565034017480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |