Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 143 3e-29
seq142543 105 7e-18
seq85459 89.7 5e-13
>seq28392
Length=738
Score = 143 bits (158), Expect = 3e-29
Identities = 272/397 (69%), Gaps = 4/397 (1%)
Strand=Plus/Plus
Query 15938 AAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG- 15995
||||||||||| || ||||| | || |||||||||||||| ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 15996 CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATAT 16055
||| ||| ||| | ||||| ||| | | ||||||||| || || || || |
Sbjct 61 CTGCAAAC--CTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGT 118
Query 16056 ATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAA 16115
| || ||| || ||| || || || || || || || || || | || | |
Sbjct 119 ACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGA 178
Query 16116 ATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG 16175
| | ||||||||| ||| || | || || || | ||| ||| || |||
Sbjct 179 ACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTT 238
Query 16176 TATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235
| || |||||||| ||||| || || || ||||| || || | || || |||||||
Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298
Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295
| |||||||| ||||||| || | || ||||| |||||||||||| | ||||||||
Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358
Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332
||| ||||| || || |||||||| || || || ||
Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395
>seq142543
Length=7870
Score = 105 bits (116), Expect = 7e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| ||||||||||| || || ||||||||||| | || ||||| ||||| |||||
Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| |
Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886
Query 16344 C 16344
|
Sbjct 6887 C 6887
>seq85459
Length=10496
Score = 89.7 bits (98), Expect = 5e-13
Identities = 84/107 (79%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297
|||||||| |||||||| || | || |||||| |||||||||||| | ||||||||||
Sbjct 8942 ATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATC 8883
Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||| || || |||||||| || || || || | ||||| ||
Sbjct 8882 GATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 491670537500520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |