Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq28392 143 3e-29 seq142543 105 7e-18 seq85459 89.7 5e-13 >seq28392 Length=738 Score = 143 bits (158), Expect = 3e-29 Identities = 272/397 (69%), Gaps = 4/397 (1%) Strand=Plus/Plus Query 15938 AAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTAG-TAG- 15995 ||||||||||| || ||||| | || |||||||||||||| ||||| ||||| || Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 15996 CTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAATTCTATAT 16055 ||| ||| ||| | ||||| ||| | | ||||||||| || || || || | Sbjct 61 CTGCAAAC--CTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGT 118 Query 16056 ATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTTGTTAAAA 16115 | || ||| || ||| || || || || || || || || || | || | | Sbjct 119 ACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGA 178 Query 16116 ATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCAGACGGTG 16175 | | ||||||||| ||| || | || || || | ||| ||| || ||| Sbjct 179 ACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTT 238 Query 16176 TATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGC 16235 | || |||||||| ||||| || || || ||||| || || | || || ||||||| Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298 Query 16236 TGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATA 16295 | |||||||| ||||||| || | || ||||| |||||||||||| | |||||||| Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358 Query 16296 TCGCAGCAAATGACCCCGAAAAGAATATACCCTCAAC 16332 ||| ||||| || || |||||||| || || || || Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCAC 395 >seq142543 Length=7870 Score = 105 bits (116), Expect = 7e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| || || ||||||||||| | || ||||| ||||| ||||| Sbjct 6767 CTTCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCT 6826 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 6827 TTAGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 6886 Query 16344 C 16344 | Sbjct 6887 C 6887 >seq85459 Length=10496 Score = 89.7 bits (98), Expect = 5e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 16238 ATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATC 16297 |||||||| |||||||| || | || |||||| |||||||||||| | |||||||||| Sbjct 8942 ATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATC 8883 Query 16298 GCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||| || || |||||||| || || || || | ||||| || Sbjct 8882 GATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491670537500520