Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq3088503 387 3e-103 seq3088488 349 7e-92 seq3063309 159 7e-35 seq334975 82.4 1e-11 >seq3088503 Length=21467 Score = 387 bits (428), Expect = 3e-103 Identities = 965/1445 (67%), Gaps = 39/1445 (3%) Strand=Plus/Minus Query 2118 GTTTTGCGGATGGACATAAACGACTGCGTGACGTCGGTTGCTCCGGCGTCGTACTCCAGA 2177 || |||||||| | ||| | |||||||| | |||||| ||||||||| ||||||| Sbjct 11383 GTCTTGCGGATCGCCATCATCGACTGCGCCATGTCGGTCCACCCGGCGTCGAACTCCAGC 11324 Query 2178 CAGCCGCGGCGAATGGTGTCTTTTGCCTTGAGTACCATTGCG-GTTTTCATTTCAGGCGT 2236 | |||| | || ||| | ||||| || |||| ||| ||||| | ||| |||| Sbjct 11323 CGGCCGTTATGGATCACGTCATAGGCCTTCAGCACCAG-GCGTGTTTTGACTTCGGGCGA 11265 Query 2237 GTAACGGATGCCGCGTGCGGCCGGGTAGAATGAGCGCACCAACTGGAACACGCCGAGGCC 2296 || | || | | | |||||| |||| |||||||| ||| ||||||| || Sbjct 11264 ATAGCTGAAGGTGGTCACAGCCGGGAAGAACTGGCGCACCAGCTGCGCCACGCCGCTACC 11205 Query 2297 GAGGCCGGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTCA-GTTTGCGG- 2354 || ||||| | ||||| ||||| || || | ||| ||| | |||| | Sbjct 11204 CAGCCCGGTGACATCAATCCCGATATAGGTCACCCAGTAGCGGTCGCAGACGTTTTTGAT 11145 Query 2355 --ATGCCATCTGCCTGCGCGGCAAAGTCCATGCCCTTCCACTGGTGGCGCTCCAGCATGC 2412 ||||| ||||| || ||||||||||||||| | ||||| |||||||| | || Sbjct 11144 AAATGCC----GCCTGGGCCGCAAAGTCCATGCCCCGGAATTGGTGCCGCTCCAGGACGC 11089 Query 2413 GGAACTTGCCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAG 2472 |||| ||||| || | |||| ||||||||| | ||| || ||||| || || || | Sbjct 11088 GGAATTTGCCGCCCGGTACCAGCGGCGGCGCAACCACCACCAGCCCGGAGCAATCACCGG 11029 Query 2473 TGTGTGACGGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGGTCGGCGAACG 2532 | | | ||||||||||| ||||| || | || |||||||| | |||||| | Sbjct 11028 TTTCCGCTGGGTCGTAGCCGATCCATACCTGACGGTCACCGAACGGCCGCATGGCGAATG 10969 Query 2533 GGGCGAAGTCCTC---CCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGA 2589 | | ||||||| |||||| || |||||||||||||| ||||||| | | | Sbjct 10968 GCTTGTAGTCCTCTGCCCATTCAACCCAACTGTCGACCATGCAGCTCTGCAGCAACGCCA 10909 Query 2590 ACGGGAATACCGACGCTTTATCGTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCT 2649 |||| || | ||| |||||| |||||||| ||||| |||||||| || ||| Sbjct 10908 ACGGAAAGATGCTGGCTCCATCGTCAACAAACTCACACATCAACAGGTTGGCGAACGCCT 10849 Query 2650 CATCACTGTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGG 2709 || |||| || || | | || | ||||||||| ||||| ||| | Sbjct 10848 CAGGGCTGTACTCCCGACGCAACTCCTCAATGTCGAACAGATCACAGCCGCCGTGCTCTG 10789 Query 2710 CGTCCTCAATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCCACCGGCGA 2769 ||||| |||||||| |||||||||||| | || ||||||| | | || || Sbjct 10788 CGTCCAGGATGGTGACGATCTGCCGCCACAACCGGTCCTCGCAGAACCGCCCCTGTTGGA 10729 Query 2770 GCGCGCGGTGACTGATGTCAATTTCGATGCGGT-CGGCAATACGGCTGCGCCCCTTGTTG 2828 |||| | ||| | ||| | | | || | | || | | |||| ||||||||| Sbjct 10728 GCGCCCCGTGGGAAACGTCGACCTTGGTGTGTTGCGCCGCT--GGCTTA--CCCTTGTTG 10673 Query 2829 AACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCAGCGTTGAGGGTGTCGAAAAG 2888 || ||||||| | |||||||| || || | || |||| | || || ||||| ||| Sbjct 10672 AAGCGCTCGCCGGTCCAGAAGGTGTAGGCCTCATGGGCCATGCTGGACGGCGTCGAGAAG 10613 Query 2889 TAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTGA 2948 |||||| |||| | ||| ||| |||||||||||| ||||| ||| ||| | || | Sbjct 10612 TAGGTTTTGCGCCACTTCTTGTGCATGGCCATGCCCGAAGCGACCTTGTTCAGTTCCTCA 10553 Query 2949 AAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGAGCCGTG 3008 || || ||||||| | ||| |||| || | | ||||| | || ||| || || Sbjct 10552 AACTTGAACGTCCAGAAGAATTCGTCGAAGTAGAAATTGCCGTGGTAGCCCTGGGCGGTA 10493 Query 3009 TTGGAGTTGGTACCGAGAAAAATCAGCTTTGCGCCGTTGTTGCCAATGACAATCGGGTCG 3068 | ||||||||||| |||| ||||| ||||||||| | |||| || || || || Sbjct 10492 CGCGCATTGGTACCGAGGAAAAACAGCTCGGCGCCGTTG--GGCAAT-ACGATGGGATCC 10436 Query 3069 CCGGTCAGGTCGA---CGTCAACCAGTCGCGCAAACTGTAT-GATGTATTCGCGGAACAC 3124 || ||||| |||| || |||| || ||||| || | |||||| |||| |||| Sbjct 10435 CCCGTCAGCTCGACACCGATAACCTCACGGGCAAA-TGCCTGGATGTACCCGCGAAACAG 10377 Query 3125 GTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGTGCTCG 3184 || || || |||| || ||||| || ||||| || | ||||| | || || Sbjct 10376 ATAGGCTTGGTTTTTCGATGCGGACAGGAAGATCTGATTGCGCCCGGTTTCCAGCGCATC 10317 Query 3185 CAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATGTC 3244 || | ||||| |||| ||| || | |||||||| ||||| ||| |||||| ||| | Sbjct 10316 AAGAAACGCCTCGCGGGCAAAGTAATAGGTCGCGCCGATCTGCCGGCTTTTGAGGATGAC 10257 Query 3245 GCGAATACGGTG--TGCCAGTCCTGCGCGGTACCACTGCAACTGGTACTCGAAAGACTGG 3302 |||| | || || ||||| || |||||||| | |||||| |||||| | | Sbjct 10256 GCGAGTCCGTTGATTGCCA-----GCCCGGTACCAGTCTTTCTGGTAGTCGAAACAGCCG 10202 Query 3303 TCGAAAAATAATTCCTCCAGCTTTTCGATAGCCTCGTCGCTGAAAAAATTCTTTTTCGGC 3362 |||| ||| ||| || | ||||| ||| ||||||| | || ||| | | Sbjct 10201 TCGATAAACGCTTCACGCAACAGCTCGATCTGCTCTTCGCTGATATCGTTTTTTGGGGTC 10142 Query 3363 TTCTTGCGCTCACCCTTGTTGCGGTTGGCGACGTTGGGGTTAAGGTCGGCCTCGTTGCCG 3422 || || | ||||| |||||| || || | ||| ||||| || |||| ||| | || Sbjct 10141 TTTTTCTTCGGACCCTCGTTGCGTTTAGCCAGGTTAGGGTTGAGCTCGGTTTCGGTACC- 10083 Query 3423 GTCTGGCTG-TAGCGGTTAACGCGTGCCAGTCGTTCAATCTGCCGCCCGAGCAGGTCAAT 3481 | | ||| |||| | || | ||| | ||||| | || || ||||| ||||| Sbjct 10082 GCCGCCCTGAAAGCGCTGAATTCTGGCCTGGCGTTCCAATTGGCGGTGCAGCAGATCAAT 10023 Query 3482 CTCTTTGAAGTCACCGCCTGACTTTTGC--GGCTTGGCGATGAGCTGAATCAGGCGCGCC 3539 || |||||||| ||||| || |||| |||| ||| ||||| | || ||||| Sbjct 10022 TTCCTTGAAGTCCCCGCC--GCTCTTGCTTTCCTTGAGGATCAGCTGCACCAACCGCGCT 9965 Query 3540 TCAAG 3544 || || Sbjct 9964 TCCAG 9960 Score = 145 bits (160), Expect = 1e-30 Identities = 205/288 (71%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 5501 TATCAGGATGACCCGAAACTCGTTGCCATCGTTGGCCGTAAGCTGCTGGCCGACAAATAT 5560 || ||||| ||||| | || || | ||| || || | |||||||||||||| ||| Sbjct 8099 TACCAGGAAGACCCTGATCTGGTGGTGATCTGCGGTCGCCAACTGCTGGCCGACAAGTAT 8040 Query 5561 TTTCCGCTGGTCAACAAACAGCAGGAAAACACCGAGTCGCTCGCGGCGGATATCATCATC 5620 || ||| | |||||||| | | | || || ||| || || |||||| ||| | Sbjct 8039 TTCCCGATCATCAACAAAGACAACGCGCCGACTGAAATGCTGGCCGCCGATATCGTCACC 7980 Query 5621 AGCCAGAAGCGCATCGGCAACCTGCCAGCCGTACGTGTGCCGTACTTCCCGGCGAACGCG 5680 || || |||||| | ||||| |||||||||| || ||||| ||||||||| || || | Sbjct 7979 AGTCAAAAGCGCTTGGGCAATTTGCCAGCCGTGCGCGTGCCTTACTTCCCGCCGCGCGGG 7920 Query 5681 GTGTTCGTGACCACGCTGGAAAACCTCTCTATCTATTTCATGGATGAGAGCCACCGCCGC 5740 || | || |||| |||||||||||| || ||||| | ||| | |||| ||||||| Sbjct 7919 TTGCTGGTCACCAAGCTGGAAAACCTGTCGATCTACTGGCAGGAAGGCAGCCGCCGCCGC 7860 Query 5741 AGCATTGATGAAAACCCGAAAAAAGACCGCGTGGAAAACTACGAGTCG 5788 | | | | || || | || |||||| | ||||||||||||||| Sbjct 7859 ACCGTCGTCGACAATGCCAAGCGTGACCGCATCGAAAACTACGAGTCG 7812 Score = 95.1 bits (104), Expect = 2e-15 Identities = 195/290 (67%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 431 AAGTCATCCTTTGTGGCGACCTCGCTCAGTGGCACGATTTTAATGCCGTCCGGTTTTCCA 490 || |||||||| | || ||||| || | || | | | || |||||| || || Sbjct 12324 AATTCATCCTTGGCCGCCACCTCACTGACCGGGATCAGCTGTATCCCGTCCTTCTTGCCG 12265 Query 491 TTGGGAGCGTAGAAAAACAGGTTTTTAAAATTGCCGAGCCCTTTCGAGTTGCGCATCGCC 550 |||| | || | ||||| ||| ||||||||| |||| || |||| | ||| Sbjct 12264 GTGGGCGAATACACAAACAAGTTGCGAAAATTGCCTGGCCCCTTGGAGTCCTTGAGAGCC 12205 Query 551 TCGCGCAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCGGTCACATACATGATGTAA 610 | ||||| | |||| ||||| | |||| || | ||||||| || | ||| | Sbjct 12204 TTGCGCAAAGCGTCGATATCGGTTTCAGTCTGTGCGGCATCGGTCATGTAGAGAATGAAG 12145 Query 611 CCCGCATGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTTGCGGATTCATTCAGC 670 || || || ||| |||| ||| |||||||||||||||| ||| || ||||| || ||| Sbjct 12144 CCGGCGTGACTGCCATTCTCGTAGTACTTGCGGCGGAACAACGTGGCCGATTCGTTGAGC 12085 Query 671 CAGGCGGAATTAAGCGCGCTGAGATATTCGGGCAGGCCGTAAATCTCCTG 720 | || || | | || || | | || |||| ||| ||||||||||| Sbjct 12084 AACGCCGACTGCAAGGCACTAATCCACTCCGGCAAGCCATAAATCTCCTG 12035 Score = 91.5 bits (100), Expect = 3e-14 Identities = 188/276 (68%), Gaps = 8/276 (3%) Strand=Plus/Minus Query 4031 CTTGAACACCTGCGCGGCCTGTTGCCCGATGGCATATTCAAGCGTTACGGCGATGTGGTC 4090 || |||||| | ||| |||||||||| ||| || |||||| |||||||| ||| | Sbjct 9489 CTGGAACACTTCCGCAGCCTGTTGCCGGATAGCCCATTCAAAGCCTACGGCGACGTGCTG 9430 Query 4091 GAGCTGAAAGCCGA-GAAGATTGACGACGATTCTGCGCTTAACGGCAAGTGGGCGTTGTT 4149 | | | || |||| |||| | || | | | || || |||| ||| |||| Sbjct 9429 GCGGTCAAGACCGAAGAAG-TGGAAATCAA--CGGCCAGAAA----AAGTTGGCTCTGTT 9377 Query 4150 CGCTAAAATCACCCCGACCGATGACCTTATCGCGATGAATAAAGCCGCGCAGAAGGTCTA 4209 ||| || || ||||| || || ||||| ||||| || ||| |||||||||||| Sbjct 9376 CGCCCAAGTCGAACCGACGCCCGAACTGATCGCCATGAACAAGGCCAGGCAGAAGGTCTA 9317 Query 4210 CACCTCAATGGAAATTCAGCCGAATTTTGCCAATACCGGCAAATGCTACCTCGTCGGCCT 4269 |||||| || ||||| | | || ||| | || || || |||| ||||||| || Sbjct 9316 CACCTCCATCGAAATCGACGACAGCTTCGCCGACACAGGGGAAGCCTACATCGTCGGTCT 9257 Query 4270 TGCTGTCACCGATGACCCGGCGAGCCTCGGCACTGA 4305 || |||||||| ||| || ||| | || ||||| Sbjct 9256 GGCAGTCACCGACTCCCCTGCCAGCTTGGGTACTGA 9221 >seq3088488 Length=17142 Score = 349 bits (386), Expect = 7e-92 Identities = 1134/1744 (65%), Gaps = 80/1744 (5%) Strand=Plus/Minus Query 14189 GATTTTCACCACGGCACGAAGGTCATCGAAATAAATGACGGTACGCGTGTTATTTCCACG 14248 |||| || ||||||| | |||||||||| | || ||||| || || ||| ||| Sbjct 16622 GATTATCTCCACGGCGTGCGGGTCATCGAACTCAACGACGGCACCCGCCCCATTCGCACT 16563 Query 14249 GTCGCAACCGCAATCGTCGGCATGGTCTGGACAGCCAGCGATGCGGATGCCGAGACATTT 14308 | | |||||| || |||||||||| || || || |||||||| || | | ||| Sbjct 16562 ATTCCCACCGCAGTCATCGGCATGGTTTGCACCGCTGAAGATGCGGA--CCCACTCGTTT 16505 Query 14309 CCCCTCA--ACGAGCCGGTACTGATTACCAATGTGCAGAGCGCCATTGCGAAAGCCGGTA 14366 ||||| || || || || || ||||| ||||| | |||| | | || ||||| Sbjct 16504 TCCCTCTGGACACTCCAGTCCTCATCACCAACGTGCAAACCGCCGTCGGCAAGGCCGGCG 16445 Query 14367 AAAAAGGCACTCTGTCAGCTTCCCTGCAGGCCATCGCCGACCAGTCAAAGCCTGTCACCG 14426 || ||||| ||| | || |||||| | ||||||||||||| | |||||| | | Sbjct 16444 TCAAGGGCACCCTGGCTGCCAGCCTGCAAGGCATCGCCGACCAGACCAAGCCTTAC---G 16388 Query 14427 TTGTCGTGCGCGTTGCCGAAGGT-ACCGGAGACGATGCAGAAGCGCAGACCACGTCCAAC 14485 || ||||| || || ||| | | || || || |||||| ||| ||| | | Sbjct 16387 TTATCGTG---GTA--CG--GGTCAAAGAAGGCGCTGACGAAGCGACGACTACGAGCGCC 16335 Query 14486 ATTATCGGCGGCACGGATGAGAACGGTAAATACACCGGTATCAAGGCGCTGCTAACTGCC 14545 | || ||||| || | |||| |||||||||| || || || ||||| | ||| Sbjct 16334 CTGATTGGCGGTACAACACCAACCGGTCAATACACCGGCATGAAAGCTCTGCTCGCAGCC 16275 Query 14546 GAAGCGGTCACCGGCGTTAAGCCGCGCATTCTCGGTGTGCCGGGTCTCGATACGCAGGAA 14605 || | | ||| | | ||||| || || || ||||| || ||||| | | | Sbjct 16274 AAATCACGCGTGGGCATGACTCCGCGTATCCTTGGCGTGCCAGGCCTCGACAGTTTGCCA 16215 Query 14606 GTCGCAACCGCACTTGCATCGGTCTGTATCAGCCTGCGTGCGTTTGGTTACGTCAGCGCA 14665 || || ||||| || | | || | |||||| || |||| ||||| ||||| Sbjct 16214 GTAGCCACCGCCCTCGGCGCCATCGCCAAAGACCTGCGCGCCTTTGCATACGTAAGCGCC 16155 Query 14666 TGGGGCTGTAAGACCATTTCCGAGGCGATGGCATATCGCGAGAATTTCAGCCAGCGCGAG 14725 ||| ||| || |||| |||| |||| || |||||||| ||| | ||||| Sbjct 16154 TGGAACTGCAAAACCAAGGAAGAGGTAGTGGCGTACCGCGAGAACTTCGGTGCCCGCGAA 16095 Query 14726 CTGATGGTCATCTGGCCTGATTTCCTCGCATGGGATACCACCGCGAACGCCACCGNNNNN 14785 ||||||| || ||||| || ||||| ||||| || | | ||| |||| Sbjct 16094 ATGATGGTGATTTGGCCGGACTTCCTGAACTGGGACACTGTCACCAACAAGACCGCCAGC 16035 Query 14786 NNNNNNNNNNNNNNNNNNGCACTCGGTCTGCGTGCCTACATCGACCAGACTATCGGCTGG 14845 || ||||| || || ||| | |||||||| | || ||| Sbjct 16034 GCTTCGGCCGTGGCCCGCGCCCTCGGCCTTCGCGCCAAGATCGACCAAGAGACGGGTTGG 15975 Query 14846 CACAAAACGCTGTCTAACGTTGGCGTGCAGGGCGTTACCGGCATCAGCGCCTCAGTCTTT 14905 || ||||| ||||| ||||| | |||| ||||| ||||| ||||||||| || || Sbjct 15974 CATAAAACCCTGTCCAACGTGGCCGTGAGTGGCGTGACCGGTATCAGCGCCGACGTGTTC 15915 Query 14906 TGGGATTTGCAGGCATCCGGCACAGATGCTGACCTGCTCAACGAGGCCGGAGTCACCACG 14965 |||||| |||| | | ||| || || || |||||| || |||||||| Sbjct 15914 TGGGATCTGCAAAACCCAGCCACCGACGCCAACTACCTCAACAGCAACGACGTCACCACC 15855 Query 14966 CTGGTG--CGCAAGGATGGTTTCCGTTTTTGGGGGAACCGCACATGCTCTGATGACCCGC 15023 ||| | ||| | | ||||| || || ||||| | |||||| ||| |||||||||| Sbjct 15854 CTGATCAACGCCA--ACGGTTTTCGCTTCTGGGGTAGCCGCACCTGCAGTGATGACCCGT 15797 Query 15024 TTTTCCTGTTTGAGAACTACACCCGAACCGCGCAGGTGCTGGCCGACACAATGGCTGAGG 15083 | ||| || || ||||||||||| ||||||||| | || || ||||| |||| || | Sbjct 15796 TGTTCGCCTTCGAAAACTACACCCGCACCGCGCAGATCCTCGCGGACACCATGGGCGAAG 15737 Query 15084 CGCACATGTGGGCGGTCGATAAGCCCATCACCGCATCGCTCATCCGTGACATTGTCGACG 15143 ||||||||||||| || || || || ||| || || | || ||| | ||||| | Sbjct 15736 CGCACATGTGGGCAGTTGACCGCCCTATGCACGCCTCCCTGGTACGCGACCTGGTCGAAG 15677 Query 15144 GCATTAACGCCAAATTCCGCGAGCTGAAATCAAATGGCTACATCGTGGACGGTGAATGCT 15203 || | | |||||| | |||||| ||||||| | |||||| | | | ||| |||| Sbjct 15676 GCGTAAGCGCCAAGATGCGCGAGTTGAAATCCCAGGGCTACCTGATCGGCGGCAGTTGCT 15617 Query 15204 GGTTCGACGAGGA-ATCGAACGATAAGGAAACCCTCAAGGCCGGGAAACTGTATATCGAC 15262 || | || || ||| ||| || || |||||||||||||| || || | | || Sbjct 15616 GGAACCCGGACGACATC-AACACCAAAGACACCCTCAAGGCCGGCAAGCTCTGGCTTGAT 15558 Query 15263 TACGACTATACACCGGTTCCCCCACTGGAAAGCCTGACCCTGCGCCAGCGTATCACCGAT 15322 |||||||| || || || || ||||| ||| ||| ||| | |||||||| |||||||| Sbjct 15557 TACGACTACACCCCCGTGCCGCCACTTGAAGACCTCACCTTCCGCCAGCGAATCACCGAC 15498 Query 15323 AAATATCTG--------------GTGAATCTG--GCTGAATC-GGTC-AACAGCTAAGG- 15363 || ||| | | ||| | ||| || | |||| | || | || Sbjct 15497 CGTTACCTGATCGACTTCGCCAAGGGCATCAGCAGCTAAACCGGGTCTCCCCGCGAGGGG 15438 Query 15364 -----AGCCTGA---------------AACA---ACATGGCACTACCCCGCAAACTTAAA 15400 | ||||| |||| ||||||| | || ||||| || ||| Sbjct 15437 AGTTCACCCTGAACACGTATCCCGGAGAACACCGCCATGGCAATGCCTCGCAAGCTCAAA 15378 Query 15401 TATCTGAACATGTTCAATGACGGCCTTAGCTACATGGGCGTTGTTGAA-TCCGTGACGCT 15459 | || ||| |||||||||||||| ||||| | ||| ||| |||| ||| | || || Sbjct 15377 AACCTCAACCTGTTCAATGACGGCAACAGCTATCTCGGC-TTGGTGAAGTCCCTCACCCT 15319 Query 15460 GCCGAAGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATGAATGGCGCTG-CAG 15518 ||| || ||||||| | ||| |||||||||||||| ||||||||| | | || Sbjct 15318 GCCCTCCCTCGGCCGCAAGATGGAAGCGTATCGCGGCGGCGGCATGAATGGCCCGGTCAA 15259 Query 15519 CGATTGACCTCGGCCTCGACGATGATGCGCTTACTG-TCGAATGGTCTGTCGGTGGCCTG 15577 | |||||| ||| | ||| || | || | | | |||||||| ||||||||| Sbjct 15258 AG-CTGACCTGGGCATGTCCGACGACG-GCATCCAGTTCGAATGGAAGACCGGTGGCCT- 15202 Query 15578 CCTGATGTG-GCGCTGTGGGCGCAGTATGCCGC-GCCGGGGGCTGATGCCGTGCCGCTGC 15635 ||| || | || || | |||| | ||| | | | || | ||| | |||| Sbjct 15201 --CGATCTGATCTCTCTGCG-TCAGTTCGGCGCGGTCAACGCCTCCAG-TGTGGCCCTGC 15146 Query 15636 GTTTTGCTGGCTCTTACCAGCGTGACGACACTGGCGAAATCGTTGCGGTCGAGGTGGTCA 15695 | || ||||| ||||||||| |||||||| |||||| || || || ||||| Sbjct 15145 GATTCTCTGGCCCTTACCAGCAAGACGACACAGGCGAAGTCAGCAATGTGGAAGTGGTTG 15086 Query 15696 TGCGTGGCCGTCATAAAGAAATCGACGGCGGCGAAAATAAGCAGGGTGAAAATACCTCGA 15755 ||||||||||||| || ||||| ||||| ||| || || | || || Sbjct 15085 TGCGTGGCCGTCACGAAACCATCGAGATGGGCGATGCCCAGCCCGGCGAGGACAC--TGA 15028 Query 15756 CCAAAC--TGTCGACCGTTTGCACCTATTACCGCCTCACGATTGATGGTAGCGACATTAT 15813 || | || | ||| |||| ||| ||| || || | ||||| || || || Sbjct 15027 ACACTCCATGACCACCACCTGCAGCTACTACAAGCTGACCGTAGATGGCGAAGAAATCAT 14968 Query 15814 CGAAATCGACACCGTCAACATGGTCGAGAAGGTGAACGGCGTCGACCGTCTGGAACAGCA 15873 ||| ||||| ||||| | ||||||||||| ||||| || ||| ||||| |||| Sbjct 14967 CGAGATCGATCTGCTCAACTTTGTCGAGAAGGTCAACGGTGTGGACATGCTGGAGAAGCA 14908 Query 15874 CCGC 15877 |||| Sbjct 14907 CCGC 14904 >seq3063309 Length=1409 Score = 159 bits (176), Expect = 7e-35 Identities = 736/1146 (64%), Gaps = 54/1146 (5%) Strand=Plus/Minus Query 2126 GATGGACATAAACGACTGCGTGACGTCGGTTGCTCCGGCGTCGTACTCCAGACAGCCGCG 2185 ||||| || |||| ||| | || |||||| |||||||| | || | | || | Sbjct 1118 GATGGTCAGGAACGCCTGTGCGATGTCGGTCCAACCGGCGTCCCATTCGATGCGGCTCCC 1059 Query 2186 GCGAATGGTGTCTTTTGCCTTGAGTACCATTGCGGTTTTCATTTC-AGGCGTGTAACGGA 2244 | || ||||| | || |||||||||| || | |||| | || |||| ||||| ||| Sbjct 1058 CTGGATCGTGTCCTGGGCTTTGAGTACCAGTGTGTTTTTGGTCTCGAGGC-TGTAATGGA 1000 Query 2245 TGCCGC-GT-GCGGCCGGGTAGAATGAGCGCACCAACTGGAACACGCCGAGGCCGAGGCC 2302 | ||| || || ||||||||| |||||||| | ||||| ||| ||||| || Sbjct 999 T--CGCTGTCGCACGCGGGTAGAAGTCGCGCACCAGGTCAAACACACCGTAGCCGATACC 942 Query 2303 GGTTGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTCAGTTTGCGGATGCCATC 2362 ||||| || |||||||||| | ||| || | |||||| ||||| || || Sbjct 941 GGTTGTATCGATGCCGATGTGCTGCACGTTGAAACGCTCGGTAAGTTTCTTGACCTGGTC 882 Query 2363 TGCCTGCG-CGGCAAAGTCCATGCCCTT-CCACTGGTGGCGCTCCAGCATGCGGAACTTG 2420 ||||| | || | | ||||| ||| ||| ||||| |||||||| || Sbjct 881 GGCCTGGTACTTGAACGAC--TGCCCACGCCAACTGTGTTTTTCCAGGATGCGGAATTTC 824 Query 2421 CCACCAGAAACCACCGGCGGCGCGAGCACGACGCACCCGGCGCTGTCGCCAGTGTGTGAC 2480 | || | ||| ||||| |||| ||| |||||| |||| ||||| ||| | | Sbjct 823 GCTCCGGGTTCCAGTGGCGGAGCGACCACCACGCACGTGGCGTCGTCGCGGGTGCGGCTC 764 Query 2481 GGGTCGTAGCCAATCCAGACGGGGCGAGAGCCGAACGGATGGTCGGCGAACGGGGCGAAG 2540 || |||||||||| ||| || |||| |||||| || | || ||| | || Sbjct 763 GGATCGTAGCCAAGCCACACCGGGCTGTTGCCGAAAGGTCGATCCAGTTCAGGGTTGTAG 704 Query 2541 TCCTCCCATTCTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACC 2600 |||||||| | | | || |||| || |||| ||| || | || ||| Sbjct 703 TCCTCCCA--CAACGA-CAGGTCGGAGTAACACCGCTCCAGGTCTTTGAGGCCGAA---- 651 Query 2601 GACGCTTTATC----GTCGACAAACTCGCACATAAACAGGTTTTTAAAGTCCTCATCACT 2656 | |||| | | ||||| |||| ||| ||||| | | || | || || Sbjct 650 GGCGCTCTGGCTGCTGTCGATGAACTTGCAGTAGAACAGCTGCTGGAATTTGTCTTCGTC 591 Query 2657 GTTTTCGCGTTTGAGTTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAGGGCGTCCTC 2716 || || | | ||||| |||||||||||||| |||||| ||||| | |||||| || Sbjct 590 GTACTCCAGCTGCAGTTGCTCGAGGTCGAACAGATCGCAGCCGCCGGCTATGGCGTCGTC 531 Query 2717 AATGGTGACAATCTGCCGCCACTGGCCATCGTCGCAGAGCTGGCCACCGGCGAGCG---- 2772 | ||||| | | ||||| ||||| ||| ||| | ||| || | | Sbjct 530 CAGGGTGATGGTTTTGCGCCATTGGCCGTCGGGGCACAATGCGCCCTGGGTGTATGACGC 471 Query 2773 CGCGGTGACTGATGTCAATTTCGATGCGGTCGGCAATACGGCTGCGCCCCTTGTTG---A 2829 | ||||| | || | ||| | |||| | || |||| ||||| | Sbjct 470 CTCGGTGG-----GCCA-----GGTGCCGCCGGCCTTCTTGCCGCGCTTGCTGTTGCGGA 421 Query 2830 ACAGCTCGCCAGACCAGAAGGGATAAGCGCCGTGCGCCA--GCGTTGAGGGTGTCGAAAA 2887 | |||||| |||||||| || || || ||||| | ||| || || |||||||| Sbjct 420 ATTCCTCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTG--GGCGTCGAAAA 363 Query 2888 GTAGGTTGAGCGCAGATGCTTCTGCGAGGCCATGCCCGAGGCGACTTTGCGCAGCTTCTG 2947 ||||||| |||| | ||| || | | ||||| | ||| || ||| || || | Sbjct 362 GTAGGTTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGTC 303 Query 2948 AAAATTCGGGATCCAGAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGAGCCGT 3007 || | | ||||| || |||||||| || | || ||| | | || ||| || || Sbjct 302 GAAGTCACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGGT 243 Query 3008 GTTGGAGTTGGTACCGAGA--AAAATCAGCTTTGCGCCGTTGTTGCCAATGACAATCGGG 3065 | || ||||| ||| | ||| ||||| ||||||||| || || |||||| Sbjct 242 GCTGCTATTGGT--CGACAAGAAACGCAGCTCGGCGCCGTTGCTGAGCGTG---ATCGGG 188 Query 3066 TCGCCGGTCAGGTCGACGTC-AACCAGTCGC---GCAAACTGTATGATGTATTCGCGGAA 3121 | ||||||||| |||| ||| ||||| | || |||||||| |||||||| |||||| Sbjct 187 TTGCCGGTCAGCTCGATGTCGAACCACT-GCTTTGCAAACTGGATGATGTAACTGCGGAA 129 Query 3122 CACGTAAGCCTGCGTTTTACTGGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGTGC 3181 | | | ||||| ||||||||||| || | |||||| | ||||||| | || Sbjct 128 AATTTCCGACTGCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGC 69 Query 3182 TCGCAGCAGTGCCTCACGGGAAAAATAGAACGTCGCGCCAATCTGGCGGGATTTGAGAAT 3241 || | || || | || || ||| ||||| ||| | ||||||| ||| || || Sbjct 68 GTCCATGAACGCTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGAT 9 Query 3242 GTCGCG 3247 || ||| Sbjct 8 GTTGCG 3 >seq334975 Length=539 Score = 82.4 bits (90), Expect = 1e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 2126 GATGGACATAAACGACTGCGTGACGTCGGTTGCTCCGGCGTCGTACTCCAGACAGCCGCG 2185 ||||| || |||| ||| | || |||||| |||||||| | || | | || | Sbjct 317 GATGGTCAGGAACGCCTGGGCGATGTCGGTCCAACCGGCGTCCCATTCGATGCGGCTCCC 258 Query 2186 GCGAATGGTGTCTTTTGCCTTGAGTACCATTGCGGTTTTCATTTCAGGCGTGTAACGGAT 2245 | || ||||| | ||||||||||||| | | |||| ||||| | ||||| |||| Sbjct 257 CTGGATCGTGTCCTGGGCCTTGAGTACCAGAGTGTTTTTGGTTTCAAGGCTGTAATGGAT 198 Query 2246 GCCGCGTGCGGCCGGGTAGAATGAGCGCACCAACTGGAACACGCCGAGGCCGAGGCCGGT 2305 || || ||| ||||| |||||||| | ||||||||| ||| | ||||| Sbjct 197 CGCGGTCGCTCGCGGATAGAAGTCGCGCACCAGGTCAAACACGCCGTAGCCAATACCGGT 138 Query 2306 TGCGTCAATGCCGATGTATTCGACGCTGTATTTCTCGGTCAGTTT 2350 | ||| |||||||||| | ||| || | |||||| ||||| Sbjct 137 CGTGTCGATGCCGATGTGCTGCACGTTGAAACGCTCGGTAAGTTT 93 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94285522497052