Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq181548 307 7e-79 seq35684 223 2e-53 seq22335 206 2e-48 seq2997450 156 3e-33 seq222920 156 3e-33 seq3057172 123 2e-23 seq118786 123 2e-23 seq1532980 105 5e-18 seq2786647 91.5 1e-13 seq2786646 91.5 1e-13 >seq181548 Length=26299 Score = 307 bits (340), Expect = 7e-79 Identities = 328/431 (76%), Gaps = 4/431 (1%) Strand=Plus/Plus Query 3979 TTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACATTAGAAAGAACA 4038 || || |||||||||| |||||||||||| |||||| || || ||| ||| ||||| Sbjct 17161 TTTTCTTATACTTCAAGTTTGTACTTAATGACTTTCTCCTCCTGGACA---GAAGGAACA 17217 Query 4039 CTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCA 4098 | ||||||||| | |||||| || || || | |||| |||||||||||| || ||| Sbjct 17218 CCTGGATATTCCGGGAGAAGTTTATAATTTTCCAAATCATTTTCTGGAAAAAATGTATCA 17277 Query 4099 CATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATA 4158 | |||||| ||||||||||| | | || ||| | | |||||| || ||| | || | Sbjct 17278 CTTTCAAATTCTTGCATGATTGTTGCCAGAAATAATCTAAGATGGCCTGGCTTGTTCCTG 17337 Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||||| | |||||| | ||| | || | |||||||||| ||||| || |||| Sbjct 17338 GCTTCCTTATATATAGAACTGCTTCCTGCTTTCAA-ACCATGTCTAGTTTATCTGTTAAT 17396 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTA 4278 |||| || | | |||||| ||| |||||||| | ||| || || | ||||||||||| Sbjct 17397 GCTGGTTGCTTGATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCC 17456 Query 4279 TGTGGAAGCTCCTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGG 4338 |||||| | ||||| ||||| | ||| || | |||||||||| |||| |||| || Sbjct 17457 TGTGGAGGTTCCTTGAGTTCTCTATTGATAATTATATTAATTCTGTCTTTGAAAGATCGA 17516 Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||| ||||| |||||| ||||| |||| |||||||| ||||||||||||||| Sbjct 17517 TTCTTCTCTGGAATGTTGAACCATGTCTTCCTACCTATAATCACCAAATTCTGTTTATCT 17576 Query 4399 GGTACAGAAGA 4409 ||| ||||| Sbjct 17577 TCTACTGAAGA 17587 >seq35684 Length=2433 Score = 223 bits (246), Expect = 2e-53 Identities = 213/276 (77%), Gaps = 14/276 (5%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTT--------------TT 4013 |||||| ||||| |||||||||||||||||||||||||| | | || Sbjct 280 ATTAATTGTTCTTTTCATATACTTCAAATTTGTACTTAATGCCTGTACAATAATGTACTT 221 Query 4014 CTCTTCTTGCACATTAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAG 4073 || || || |||| || |||||| ||| |||||| | |||||| ||||| || | Sbjct 220 TTCCTCCTGGACATCCAAAGGAACACCTGGGTATTCTGGAAGAAGTTTATATTTTTCAAA 161 Query 4074 ATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAG 4133 ||||| |||||| ||||| || |||| |||||| |||||||||||||| |||||||| || Sbjct 160 ATCAATTTCTGGGAAAAACGTATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAG 101 Query 4134 TTTAAGATCGCATGGATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCA 4193 | |||||| || ||| | ||| ||||| ||||| |||||||| ||||| | |||||| Sbjct 100 TCTAAGATGGCCTGGCTTGTCCATGGCTTCCTTATAGACAGAACTGCCTCCCACTATCCA 41 Query 4194 GACCATGTCTACTTTATTTGCTAATTCTGGCTGTTC 4229 ||||||||||||||||||| ||||||||| | ||| Sbjct 40 AACCATGTCTACTTTATTTGTTAATTCTGGATCTTC 5 >seq22335 Length=43509 Score = 206 bits (228), Expect = 2e-48 Identities = 192/244 (79%), Gaps = 0/244 (0%) Strand=Plus/Minus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||| ||||||||||||| | ||| | || || |||| Sbjct 39984 ATTAATTGTTCTTTTCATATACTTCAGATTTGTACTTAATGCCTTTTTTCTCCTGGACAT 39925 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 |||| |||||| |||||||||| | |||||| |||| || | ||||| |||||||| Sbjct 39924 CAGAAGGAACACATGGATATTCTGGGAGAAGTTTATATTCTTCCAAATCAATTTCTGGAA 39865 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| || | || |||||| ||||||||||| || |||||||| ||| |||||| || || Sbjct 39864 AAAATGTATTACTTTCAAATTCTTGCATGATTCTTGTCACAAATAGTCTAAGATGGCCTG 39805 Query 4148 GATAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTT 4207 | | | || | ||| || | |||||||| ||||| |||||| |||||||||| || Sbjct 39804 GCTTGTTTATGGATTCCTTGCAAACAGAACTGCCTCCCGCTATCCAAACCATGTCTATTT 39745 Query 4208 TATT 4211 |||| Sbjct 39744 TATT 39741 >seq2997450 Length=648 Score = 156 bits (172), Expect = 3e-33 Identities = 151/194 (78%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 4339 TTCTTCTCAGGAATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 |||||||| ||||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 646 TTCTTCTCTGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 587 Query 4399 GGTACAGAAGATGTAGTAGTCATTCTTTGGAAATGTTTAAAATCATTCATAAGTCTTGGC 4458 ||| ||||| ||||||||||||||||||| | || ||||| | ||| ||| Sbjct 586 TCTACTGAAGAGACTGTAGTCATTCTTTGGAAATACCTGAATTCATTTCTGAGTGGAGGC 527 Query 4459 CAAGGCAAGTTACCTTGTTTGCCAATGCCCATGTTTTGAGCTACAGCAACAATGCAGTTT 4518 || |||| ||| || | ||||| ||||||||||| || | ||||| || ||||| ||| Sbjct 526 CAGGGCAGGTTCCCGTCCTTGCCGATGCCCATGTTCTGGGACACAGCGACGATGCAATTT 467 Query 4519 AGTGCTTGAACCAT 4532 || | ||||||| Sbjct 466 AGCGGACGAACCAT 453 >seq222920 Length=4773 Score = 156 bits (172), Expect = 3e-33 Identities = 143/181 (79%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 3968 ATTAATGATTCTTCTCATATACTTCAAATTTGTACTTAATACTTTTCTCTTCTTGCACAT 4027 |||||| ||||| |||||||||||||||| ||||||||| | ||| || || || |||| Sbjct 3164 ATTAATTGTTCTTTTCATATACTTCAAATTCGTACTTAATGCCTTTTTCCTCCTGGACAT 3223 Query 4028 TAGAAAGAACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAA 4087 | |||||| ||| |||||| | |||||| ||||| || | ||||| |||||| | Sbjct 3224 CCAAGGGAACACCTGGGTATTCTGGAAGAAGTTTATATTTTTCAAAATCAATTTCTGGGA 3283 Query 4088 AAAAGGTGTCACATTCAAAGTCTTGCATGATCCTAGTCACAAACAGTTTAAGATCGCATG 4147 |||| | |||| |||||| |||||||||||||| |||||||| ||| | |||| || || Sbjct 3284 AAAACATATCACTTTCAAATTCTTGCATGATCCTTGTCACAAATAGTCTCAGATGGCCTG 3343 Query 4148 G 4148 | Sbjct 3344 G 3344 Score = 111 bits (122), Expect = 1e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 4370 TACCCATAATCACTAAATTCTGTTTATCTGGTACAGAAGATGTAGTAGTCATTCTTTGGA 4429 ||||||||||||| |||||||||||| | ||| ||||| |||||||||||||||| Sbjct 3598 TACCCATAATCACCAAATTCTGTTTACTTTCTACTGAAGACACTGTAGTCATTCTTTGGA 3657 Query 4430 AATGTTTAAAATCATTCATAAGTCTTGGCCAAGGCAAGTTACCTTGTTTGCCAATGCCCA 4489 ||| | || ||||| | ||| ||||| |||| ||| | | |||| |||| || Sbjct 3658 AATACCTGAATTCATTTCTGAGTGGAGGCCAGGGCAGGTTCCTGTTCTTGCTGATGCTCA 3717 Query 4490 TGTTTTGAGCTACAGCAACAATGCAGTTTAG 4520 |||| || | ||||| |||||||||||||| Sbjct 3718 TGTTCTGGGACACAGCGACAATGCAGTTTAG 3748 Score = 102 bits (112), Expect = 6e-17 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 4159 GCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAAT 4218 ||||| ||||| |||||||| ||||| | |||||| || | |||||||||||||| |||| Sbjct 3409 GCTTCCTTATAAACAGAACTGCCTCCCACTATCCAAACTACGTCTACTTTATTTGTTAAT 3468 Query 4219 TCTGGCTGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTT 4259 ||||| | ||| |||||| ||| |||||||| | ||| || Sbjct 3469 TCTGGATCTTCAATAAGTTCTAAGGCATCATCCAGACTTTT 3509 >seq3057172 Length=1274 Score = 123 bits (136), Expect = 2e-23 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26927 AGATAGCTTTTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCAC 26986 ||| |||| ||| | || | | | |||||||| || || || |||||||| || | ||| Sbjct 201 AGAAAGCTCTTAAGCCACGTGGCGGACAATGGGGGTGACACAGGTGCAGCCCACGGCCAC 142 Query 26987 TAGCATCTTCTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAG 27046 ||||||||||| |||| || || | ||||||| | || || | | || | || || Sbjct 141 CAGCATCTTCTCCAGCCGGAAGGAGTGAGGGCAGTGCCGAGGCTCCCTTCGTAGGACCAG 82 Query 27047 AATCTCTTGTTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAAC 27106 || ||||| ||||| | ||| ||||||||||| | ||| || ||||| |||||||| | Sbjct 81 GATTTCTTGCTGGATGGTGACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGAT 22 Query 27107 ACATCCTAAGTAGCGACACTT 27127 ||| ||| ||| || ||||| Sbjct 21 ACAGCCTGAGTGGCTGCACTT 1 >seq118786 Length=8115 Score = 123 bits (136), Expect = 2e-23 Identities = 103/126 (82%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 ||||| |||||||| ||||| | |||||| ||||||||||||||||||| ||||||||| Sbjct 6413 TTATAAACAGAACTGCCTCCCACTATCCAAACCATGTCTACTTTATTTGTTAATTCTGGA 6354 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGA 4284 | ||| |||||| ||| |||||||| | ||| || || | ||||||||||| | |||| Sbjct 6353 TCTTCAATAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGGA 6294 Query 4285 AGCTCC 4290 | ||| Sbjct 6293 GGTTCC 6288 Score = 120 bits (132), Expect = 2e-22 Identities = 92/109 (84%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| ||||| | |||||||| | |||||||||| | |||||||| || |||||||| || Sbjct 2834 CTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGG 2775 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| ||||| ||||||||||||| |||||||||||| || Sbjct 2774 AATGGAGAACCAGGTCTTCCTACCCATAATCACCAAATTCTGTTTACCT 2726 >seq1532980 Length=125 Score = 105 bits (116), Expect = 5e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 4232 TAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGGAAGCTCCT 4291 |||||| ||| |||||||| | ||| || || | ||||||||||| | || | | |||| Sbjct 121 TAAGTTCTAAGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCCTTTGAAGGTTCCT 62 Query 4292 TTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGGAA 4351 | ||||| | |||||||| | |||||||||| | |||||||| || |||||||| |||| Sbjct 61 TGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTTTAAAGGTCGATTCTTCTCTGGAA 2 Query 4352 T 4352 | Sbjct 1 T 1 >seq2786647 Length=228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27065 GACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACA 27124 ||| ||||||||||| | ||| || ||||| |||||||| | ||| ||| ||| || || Sbjct 1 GACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGATACAGCCTGAGTGGCTGCA 60 Query 27125 CTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||| || ||||| ||||||||||| || || || | || |||||||| Sbjct 61 CTTCGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTCATTGCG 108 >seq2786646 Length=228 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 27065 GACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAAGTAGCGACA 27124 ||| ||||||||||| | ||| || ||||| |||||||| | ||| ||| ||| || || Sbjct 1 GACAGAGTTCATGTGATGGTCCACCTTCCCTTCAGCATTGATACAGCCTGAGTGGCTGCA 60 Query 27125 CTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 ||| || ||||| ||||||||||| || || || | || |||||||| Sbjct 61 CTTGGCCTCCCAGATCACAGAGGGGTACCTCTCAGGGTCCTCATTGCG 108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347653261283261