Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001416.1
Length=48502
Score E
Sequences producing significant alignments: (Bits) Value
seq3043706 91.5 4e-14
seq3088057 80.6 8e-11
seq333413 80.6 8e-11
>seq3043706
Length=1055
Score = 91.5 bits (100), Expect = 4e-14
Identities = 172/248 (69%), Gaps = 10/248 (4%)
Strand=Plus/Plus
Query 16216 CTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAATACAGC 16275
|||||||| || || | |||||||| ||||| ||||||| || || ||||||
Sbjct 813 CTGCGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGC 872
Query 16276 GGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGTCTG-TG 16334
|| | ||||| || || || ||| | || | | | ||||| ||||||| ||| |
Sbjct 873 GGCGTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGA-TCTACTA 931
Query 16335 GGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTG--CGGCGG--ATG 16390
|| ||||| || | |||||| ||| | || | |||| | || ||| | |
Sbjct 932 CGACCTGCTGCTGCACCAGCGCTATGGCCTCGGCCA----CTTGCTCAACGCCGGCCAAG 987
Query 16391 TGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCT 16450
|||| || |||| |||||| |||||||||||||||||||||| | ||| |||| |||
Sbjct 988 TGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCA 1047
Query 16451 TTGGCGGC 16458
||||||
Sbjct 1048 AGGGCGGC 1055
>seq3088057
Length=7030
Score = 80.6 bits (88), Expect = 8e-11
Identities = 152/221 (69%), Gaps = 2/221 (1%)
Strand=Plus/Plus
Query 16272 CAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCT-GGTGTC 16330
|| ||| ||||||||||| || || ||| ||| |||| ||||||| || | |||||
Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGT- 5663
Query 16331 TGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGATG 16390
| | || || || || || ||||||| | || | || | | ||| || |
Sbjct 5664 TTTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGG 5723
Query 16391 TGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCT 16450
| ||| ||| |||| ||| ||||| || |||||||| ||| |||||||| ||
Sbjct 5724 TTGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAA 5783
Query 16451 TTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTG 16491
||||||| |||||||||| | ||||| || |||||||
Sbjct 5784 AAGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824
>seq333413
Length=629
Score = 80.6 bits (88), Expect = 8e-11
Identities = 70/87 (80%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 16405 CTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAG 16464
||||| |||||||||||||||||||||| | ||| |||| ||| |||||||| ||
Sbjct 1 CTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGGCACCGAA 60
Query 16465 CCGCGCATCACCTGTAATGCGTACCTG 16491
|||||| ||||||| || |||||||
Sbjct 61 CCGCGCTTCACCTGCAACCTGTACCTG 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 149396899310048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |