Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq3043706 91.5 4e-14 seq3088057 80.6 8e-11 seq333413 80.6 8e-11 >seq3043706 Length=1055 Score = 91.5 bits (100), Expect = 4e-14 Identities = 172/248 (69%), Gaps = 10/248 (4%) Strand=Plus/Plus Query 16216 CTGCGCGGGCGTATTCTGCAGGTGCCGTCGAACTATAACCCGCAGACGCGGCAATACAGC 16275 |||||||| || || | |||||||| ||||| ||||||| || || |||||| Sbjct 813 CTGCGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGC 872 Query 16276 GGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCTGGTGTCTG-TG 16334 || | ||||| || || || ||| | || | | | ||||| ||||||| ||| | Sbjct 873 GGCGTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGA-TCTACTA 931 Query 16335 GGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTG--CGGCGG--ATG 16390 || ||||| || | |||||| ||| | || | |||| | || ||| | | Sbjct 932 CGACCTGCTGCTGCACCAGCGCTATGGCCTCGGCCA----CTTGCTCAACGCCGGCCAAG 987 Query 16391 TGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCT 16450 |||| || |||| |||||| |||||||||||||||||||||| | ||| |||| ||| Sbjct 988 TGGACAAGTGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCA 1047 Query 16451 TTGGCGGC 16458 |||||| Sbjct 1048 AGGGCGGC 1055 >seq3088057 Length=7030 Score = 80.6 bits (88), Expect = 8e-11 Identities = 152/221 (69%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 16272 CAGCGGTATCTGGGACGGAACGTTTAAACCGGCATACAGCAACAACATGGCCT-GGTGTC 16330 || ||| ||||||||||| || || ||| ||| |||| ||||||| || | ||||| Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGT- 5663 Query 16331 TGTGGGATATGCTGACCCATCCGCGCTACGGCATGGGGAAACGTCTTGGTGCGGCGGATG 16390 | | || || || || || ||||||| | || | || | | ||| || | Sbjct 5664 TTTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGG 5723 Query 16391 TGGATAAATGGGCGCTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCT 16450 | ||| ||| |||| ||| ||||| || |||||||| ||| |||||||| || Sbjct 5724 TTGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAA 5783 Query 16451 TTGGCGGCACGGAGCCGCGCATCACCTGTAATGCGTACCTG 16491 ||||||| |||||||||| | ||||| || ||||||| Sbjct 5784 AAGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824 >seq333413 Length=629 Score = 80.6 bits (88), Expect = 8e-11 Identities = 70/87 (80%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 16405 CTGTATGTCATCGGCCAGTACTGCGACCAGTCAGTGCCGGACGGCTTTGGCGGCACGGAG 16464 ||||| |||||||||||||||||||||| | ||| |||| ||| |||||||| || Sbjct 1 CTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGGCAAGGGCGGCACCGAA 60 Query 16465 CCGCGCATCACCTGTAATGCGTACCTG 16491 |||||| ||||||| || ||||||| Sbjct 61 CCGCGCTTCACCTGCAACCTGTACCTG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149396899310048