Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001609.1 Length=11624 Score E Sequences producing significant alignments: (Bits) Value seq3078897 87.8 1e-13 >seq3078897 Length=2073 Score = 87.8 bits (96), Expect = 1e-13 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 2724 CCACCACTGCATCATTAAACGCCGCTCATCCAAATGCTCGGAGGTATGGATATATGCCGC 2783 |||||| | ||| || | | ||||| || | ||||| | ||||| || || || Sbjct 640 CCACCAGTTCATGATCAGCCTGCGCTCCTCGATGAACTCGGCCTTGTGGATGTAAGCGGC 699 Query 2784 ACGTACATTATTACGCTCTGAGTGGCTCAGTTGCCTCTCTATCGCGTCATCACTCCATAA 2843 || || || || || || |||||||| |||| ||| || || || |||| || Sbjct 700 GCGGACGTTGTTGCGTTCCTTGTGGCTCATCTGCCGCTCGATGGCTGTGTCCGTCCACAA 759 Query 2844 CCCCGACTCCCCCAACGCACCACGCGCCATAGTCCTAAACCCATGCCCACACACCTCGGT 2903 || ||||| || || | | ||||| | | ||||||||||||||| | ||||| Sbjct 760 GCCTGACTCGATCAGTGCGCTGCAGGCCATCGAACGAAACCCATGCCCACAGATCTCGGA 819 Query 2904 TTTAGTATCATAGCCCATCGCACGCAATGCGCTGTTTACCGTGTTTTC 2951 ||| || || || |||||| || | |||||||| ||||||||||| Sbjct 820 TTTGGTGTCGTACCCCATCTTCCGAAGCGCGCTGTTCACCGTGTTTTC 867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 35793172043152