Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001650.2
Length=184439
Score E
Sequences producing significant alignments: (Bits) Value
seq8369 329 4e-85
seq2585192 179 4e-40
seq116363 176 5e-39
seq14698 150 2e-31
seq1495313 98.7 1e-15
>seq8369
Length=31304
Score = 329 bits (364), Expect = 4e-85
Identities = 610/888 (69%), Gaps = 14/888 (2%)
Strand=Plus/Minus
Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417
||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| |
Sbjct 2696 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 2637
Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477
||| ||| || ||||| || | || | | || ||||| | ||| | ||||||||
Sbjct 2636 ATTCTCACAAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCC 2577
Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537
|| ||||| |||| || || || || ||||||| ||||| |||||| || | || |
Sbjct 2576 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 2518
Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597
| || ||| |||||| ||| |||||||| ||||| || | | ||||||| |
Sbjct 2517 C--GAGTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGA 2460
Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657
||||||| || |||| | ||||||||| | || ||||| ||||||| || | |||
Sbjct 2459 TTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTC 2400
Query 176658 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 176715
| || || ||| || ||| | ||||| || | ||| || || || | | |
Sbjct 2399 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGAATCGTCACTAGCATCT 2342
Query 176716 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 176775
|||||| ||||||| | | |||||||||| ||||||||||||| |||||
Sbjct 2341 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAG 2282
Query 176776 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 176835
| || ||| | | || |||| ||||||||| | ||||| ||||
Sbjct 2281 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 2222
Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895
||| ||| | | | ||| ||| | |||| | ||||||||||||||||||
Sbjct 2221 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTTGCTCTGCCTCTGCTCATTATGG 2162
Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955
||||||| | | |||||| | || |||| |||| ||||||| || || || ||||
Sbjct 2161 TCATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 2102
Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015
| |||||| ||||||| |||||||| ||||||| || ||| |||| |||||||||||||
Sbjct 2101 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 2042
Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATT 177073
| | || ||||||| ||| | ||||| || | || | || | ||| |||
Sbjct 2041 ATCTAGTCGTCCTACTCTCTGCTTTTCA---AATGCACCTGGAGGCCGACTGTGAGCA-- 1987
Query 177074 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 177133
|||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| ||
Sbjct 1986 GAGCAGGCAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 1927
Query 177134 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 177193
||||||| ||||||||||| ||||| || |||| ||| | | ||||| ||||||
Sbjct 1926 TGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 1867
Query 177194 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241
|||| ||| ||||||||| |||||| |||| | ||| || || ||
Sbjct 1866 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 1819
Score = 329 bits (364), Expect = 4e-85
Identities = 610/888 (69%), Gaps = 14/888 (2%)
Strand=Plus/Minus
Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531
||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| |
Sbjct 2696 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 2637
Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591
||| ||| || ||||| || | || | | || ||||| | ||| | ||||||||
Sbjct 2636 ATTCTCACAAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCC 2577
Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651
|| ||||| |||| || || || || ||||||| ||||| |||||| || | || |
Sbjct 2576 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 2518
Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711
| || ||| |||||| ||| |||||||| ||||| || | | ||||||| |
Sbjct 2517 C--GAGTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGA 2460
Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771
||||||| || |||| | ||||||||| | || ||||| ||||||| || | |||
Sbjct 2459 TTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTC 2400
Query 9772 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 9829
| || || ||| || ||| | ||||| || | ||| || || || | | |
Sbjct 2399 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGAATCGTCACTAGCATCT 2342
Query 9830 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 9889
|||||| ||||||| | | |||||||||| ||||||||||||| |||||
Sbjct 2341 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAG 2282
Query 9890 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 9949
| || ||| | | || |||| ||||||||| | ||||| ||||
Sbjct 2281 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 2222
Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009
||| ||| | | | ||| ||| | |||| | ||||||||||||||||||
Sbjct 2221 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTTGCTCTGCCTCTGCTCATTATGG 2162
Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069
||||||| | | |||||| | || |||| |||| ||||||| || || || ||||
Sbjct 2161 TCATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 2102
Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129
| |||||| ||||||| |||||||| ||||||| || ||| |||| |||||||||||||
Sbjct 2101 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 2042
Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATT 10187
| | || ||||||| ||| | ||||| || | || | || | ||| |||
Sbjct 2041 ATCTAGTCGTCCTACTCTCTGCTTTTCA---AATGCACCTGGAGGCCGACTGTGAGCA-- 1987
Query 10188 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 10247
|||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| ||
Sbjct 1986 GAGCAGGCAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 1927
Query 10248 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 10307
||||||| ||||||||||| ||||| || |||| ||| | | ||||| ||||||
Sbjct 1926 TGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 1867
Query 10308 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355
|||| ||| ||||||||| |||||| |||| | ||| || || ||
Sbjct 1866 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 1819
>seq2585192
Length=178
Score = 179 bits (198), Expect = 4e-40
Identities = 137/162 (85%), Gaps = 0/162 (0%)
Strand=Plus/Plus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||| |||||| ||| || | ||||||||| ||||||| |||||||| ||||||||||||
Sbjct 5 AGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 64
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||| ||||| |||||||||| ||||||||| |||||||| | ||
Sbjct 65 ACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACC 124
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911
|||||||||||||| ||| |||||| || || |||||||||
Sbjct 125 ACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166
>seq116363
Length=44347
Score = 176 bits (194), Expect = 5e-39
Identities = 136/162 (84%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809
||| |||||| ||| || | ||||||||| ||||||| |||||||| ||||||||||||
Sbjct 21709 AGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 21650
Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869
|| ||||| |||||||| |||| |||||||||| ||||||||| |||||||| | ||
Sbjct 21649 ACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCC 21590
Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911
|||||||||||||| ||| |||||| || || |||||||||
Sbjct 21589 ACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 21548
>seq14698
Length=29873
Score = 150 bits (166), Expect = 2e-31
Identities = 128/157 (82%), Gaps = 3/157 (2%)
Strand=Plus/Plus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||||||| | || || |||||| || ||||| |||||||| |||||||| | |||
Sbjct 14047 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGTGAGTTCACGTGCTCC 14106
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | | | |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 14107 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 14163
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
||||| || |||| ||| ||||| |||||||||||||
Sbjct 14164 ATCATTTCCGACAAGGCTTGGCAACCCAGGTAACCCT 14200
Score = 123 bits (136), Expect = 3e-23
Identities = 122/157 (78%), Gaps = 3/157 (2%)
Strand=Plus/Minus
Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141
||||||||||| | || || |||||| || ||||| |||||||| |||||||| | |||
Sbjct 19015 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGCGAGTTCACGTGCTCC 18956
Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201
|| || | | | | |||||| ||||| ||||||||||||||||||||||| |||
Sbjct 18955 TTGATCT---CAGGCCCATAGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAAGTGG 18899
Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238
|||| || |||| ||| ||||| | | || ||||||
Sbjct 18898 ATCACTTCCGACAAGGCTTGGCAACTCTGGAAACCCT 18862
Score = 113 bits (124), Expect = 5e-20
Identities = 82/95 (86%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981
||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||||
Sbjct 11787 TCAGTTTTTCATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 11846
Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016
|||||||| |||||||| || | || |||||||
Sbjct 11847 ACTCATGGCTTTGTAGACACCCCTCTCTTGGAGCT 11881
>seq1495313
Length=124
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746
||||| | ||| || ||||| ||||| || || ||||| ||| | ||||| || |||
Sbjct 122 GGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGC 63
Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806
| ||| |||||| ||| || | ||||||||| ||||||| |||||||| |||||||||
Sbjct 62 TTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAG 3
Query 145807 GG 145808
||
Sbjct 2 GG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567296066404440
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