Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq8369 329 4e-85 seq2585192 179 4e-40 seq116363 176 5e-39 seq14698 150 2e-31 seq1495313 98.7 1e-15 >seq8369 Length=31304 Score = 329 bits (364), Expect = 4e-85 Identities = 610/888 (69%), Gaps = 14/888 (2%) Strand=Plus/Minus Query 176358 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 176417 ||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| | Sbjct 2696 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 2637 Query 176418 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 176477 ||| ||| || ||||| || | || | | || ||||| | ||| | |||||||| Sbjct 2636 ATTCTCACAAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCC 2577 Query 176478 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 176537 || ||||| |||| || || || || ||||||| ||||| |||||| || | || | Sbjct 2576 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 2518 Query 176538 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 176597 | || ||| |||||| ||| |||||||| ||||| || | | ||||||| | Sbjct 2517 C--GAGTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGA 2460 Query 176598 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 176657 ||||||| || |||| | ||||||||| | || ||||| ||||||| || | ||| Sbjct 2459 TTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTC 2400 Query 176658 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 176715 | || || ||| || ||| | ||||| || | ||| || || || | | | Sbjct 2399 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGAATCGTCACTAGCATCT 2342 Query 176716 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 176775 |||||| ||||||| | | |||||||||| ||||||||||||| ||||| Sbjct 2341 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAG 2282 Query 176776 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 176835 | || ||| | | || |||| ||||||||| | ||||| |||| Sbjct 2281 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 2222 Query 176836 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 176895 ||| ||| | | | ||| ||| | |||| | |||||||||||||||||| Sbjct 2221 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTTGCTCTGCCTCTGCTCATTATGG 2162 Query 176896 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 176955 ||||||| | | |||||| | || |||| |||| ||||||| || || || |||| Sbjct 2161 TCATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 2102 Query 176956 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 177015 | |||||| ||||||| |||||||| ||||||| || ||| |||| ||||||||||||| Sbjct 2101 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 2042 Query 177016 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATT 177073 | | || ||||||| ||| | ||||| || | || | || | ||| ||| Sbjct 2041 ATCTAGTCGTCCTACTCTCTGCTTTTCA---AATGCACCTGGAGGCCGACTGTGAGCA-- 1987 Query 177074 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 177133 |||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| || Sbjct 1986 GAGCAGGCAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 1927 Query 177134 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 177193 ||||||| ||||||||||| ||||| || |||| ||| | | ||||| |||||| Sbjct 1926 TGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 1867 Query 177194 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 177241 |||| ||| ||||||||| |||||| |||| | ||| || || || Sbjct 1866 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 1819 Score = 329 bits (364), Expect = 4e-85 Identities = 610/888 (69%), Gaps = 14/888 (2%) Strand=Plus/Minus Query 9472 CCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGTTGTTGGGCAATATCTTAGTGGTGATT 9531 ||| | |||||| || ||||| | |||| ||| |||||||| | | |||||| | Sbjct 2696 CCCCCACTGTATTCCCTGGTGTTCATGATTGGTTTGCTGGGCAATGTAGTGGTGGTGGTG 2637 Query 9532 ATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCA 9591 ||| ||| || ||||| || | || | | || ||||| | ||| | |||||||| Sbjct 2636 ATTCTCACAAAATACAAGAGGCTCCGTATTATGACCAACATCTACCTGCTCAACTTGGCC 2577 Query 9592 ATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATATTGGAATGTAT 9651 || ||||| |||| || || || || ||||||| ||||| |||||| || | || | Sbjct 2576 ATTTCTGATGTGCTCTTCCTATTCACGCTGCCATTCTGGATTCACTATGTTAGG-TGGAA 2518 Query 9652 CATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCA 9711 | || ||| |||||| ||| |||||||| ||||| || | | ||||||| | Sbjct 2517 C--GAGTGGGTTTTTGGCCACTCCATGTGTAAATTGCTCTCTGGGCTCTATTACATGGGA 2460 Query 9712 CTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTC 9771 ||||||| || |||| | ||||||||| | || ||||| ||||||| || | ||| Sbjct 2459 TTGTACAGTGAGATCTTCTTCATCATCCTCTTGACCATAGACCGGTATCTGGCCATCGTC 2400 Query 9772 TATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCATAGTTACCTGTGTAT 9829 | || || ||| || ||| | ||||| || | ||| || || || | | | Sbjct 2399 CACGCCGTGTTTGCCCTTCGAGCCC--GTACAGTCACTTTTGGAATCGTCACTAGCATCT 2342 Query 9830 GTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTTTCATGGACACCAAG 9889 |||||| ||||||| | | |||||||||| ||||||||||||| ||||| Sbjct 2341 TCACCTGGGGCCTGGCAGTGCTAGCAGCCCTCCCTGAGTTTTTCTTTCATGAGTCCCAAG 2282 Query 9890 ATGACAATGGTAGGGTTCAGTGTGATCCTTACTACCCAGAGATGTCTACAAATGTTTGGA 9949 | || ||| | | || |||| ||||||||| | ||||| |||| Sbjct 2281 AGGAGGCTGGACAGACTATCTGCAGTCCTCTTTACCCAGAGGATAATGAAAATGCCTGGA 2222 Query 9950 GGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGCCTCTGCTCATTATGG 10009 ||| ||| | | | ||| ||| | |||| | |||||||||||||||||| Sbjct 2221 AGCGTTTCCATGCTCTGAGAATGAATATCCTGGGTCTTGCTCTGCCTCTGCTCATTATGG 2162 Query 10010 CTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCAGCAAGAAGAAGTACA 10069 ||||||| | | |||||| | || |||| |||| ||||||| || || || |||| Sbjct 2161 TCATCTGCTATTCAGGAATTATTAAAACACTGCTGAGATGCCCCAGTAAAAAAAAATACA 2102 Query 10070 AGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTTTTTGGACACCCTACA 10129 | |||||| ||||||| |||||||| ||||||| || ||| |||| ||||||||||||| Sbjct 2101 AAGCCATCCGGCTCATTTTTGTCATTATGGTGGTCTTCTTTATTTTCTGGACACCCTACA 2042 Query 10130 ACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAA--CCTGCAGTGTGCATT 10187 | | || ||||||| ||| | ||||| || | || | || | ||| ||| Sbjct 2041 ATCTAGTCGTCCTACTCTCTGCTTTTCA---AATGCACCTGGAGGCCGACTGTGAGCA-- 1987 Query 10188 GAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCTACACACACTGTTG 10247 |||||| | ||||| |||| ||||| | ||| | | |||||||| ||||| || Sbjct 1986 GAGCAGGCAGCTGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACACGCACTGCTG 1927 Query 10248 CATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGACACCTGTACCACTT 10307 ||||||| ||||||||||| ||||| || |||| ||| | | ||||| |||||| Sbjct 1926 TGTCAACCCTGTGATCTACGCCTTCGTCGGCGAGAGGTTCCGGAAGCACCTCCGCCACTT 1867 Query 10308 CTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCCT 10355 |||| ||| ||||||||| |||||| |||| | ||| || || || Sbjct 1866 CTTCTACAGGCACGTGGCCACCTACCTGGGCAAATTCATGCCGTTTCT 1819 >seq2585192 Length=178 Score = 179 bits (198), Expect = 4e-40 Identities = 137/162 (85%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||| |||||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 5 AGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 64 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| ||||| |||||||||| ||||||||| |||||||| | || Sbjct 65 ACACCCAGGCCCATGTCTCCCGACCGCTGGTACAACTGGCAGGACAGCTCCCCATTCACC 124 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| ||| |||||| || || ||||||||| Sbjct 125 ACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 166 >seq116363 Length=44347 Score = 176 bits (194), Expect = 5e-39 Identities = 136/162 (84%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||| |||||| ||| || | ||||||||| ||||||| |||||||| |||||||||||| Sbjct 21709 AGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 21650 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || ||||| |||||||| |||| |||||||||| ||||||||| |||||||| | || Sbjct 21649 ACACCCAGGCCCATGTCTCCCGGCCGCTGGTACAACTGGCAGGACAGCTCCCCATTCTCC 21590 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATG 145911 |||||||||||||| ||| |||||| || || ||||||||| Sbjct 21589 ACGTAGAACTGGCAGAGGGCGTGGCACGGGGGGAGGGCCATG 21548 >seq14698 Length=29873 Score = 150 bits (166), Expect = 2e-31 Identities = 128/157 (82%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||||||| | || || |||||| || ||||| |||||||| |||||||| | ||| Sbjct 14047 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGTGAGTTCACGTGCTCC 14106 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | | | |||||||| ||||| ||||||||||||||||||||||||||| Sbjct 14107 TTGATCT---CAGGCCCATGGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAACTGG 14163 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||| || |||| ||| ||||| ||||||||||||| Sbjct 14164 ATCATTTCCGACAAGGCTTGGCAACCCAGGTAACCCT 14200 Score = 123 bits (136), Expect = 3e-23 Identities = 122/157 (78%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||||||| | || || |||||| || ||||| |||||||| |||||||| | ||| Sbjct 19015 CAGCGCCTCAGTCGCAGCCGGAGGGTCTTCAGCTTCTCCCCCAGCGAGTTCACGTGCTCC 18956 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || || | | | | |||||| ||||| ||||||||||||||||||||||| ||| Sbjct 18955 TTGATCT---CAGGCCCATAGTTCTCAGCCTGTGGCATCACCTCCTCCAGGTAAAAGTGG 18899 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 |||| || |||| ||| ||||| | | || |||||| Sbjct 18898 ATCACTTCCGACAAGGCTTGGCAACTCTGGAAACCCT 18862 Score = 113 bits (124), Expect = 5e-20 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 137922 TCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACTC 137981 ||||||||||||||| | |||||||||| ||||||||||| ||||||||||||||||| Sbjct 11787 TCAGTTTTTCATCTTCATTGTCATGTAGGTTTCTATGTAGTTGATGAAGATGTCAAACTC 11846 Query 137982 GCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 |||||||| |||||||| || | || ||||||| Sbjct 11847 ACTCATGGCTTTGTAGACACCCCTCTCTTGGAGCT 11881 >seq1495313 Length=124 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 145687 GGCTCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGC 145746 ||||| | ||| || ||||| ||||| || || ||||| ||| | ||||| || ||| Sbjct 122 GGCTCGATGTGATTCAGGTAAACGTGTGCATCTCCCAGAGTGTGTACAAAGTCACCTGGC 63 Query 145747 TCGAGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAG 145806 | ||| |||||| ||| || | ||||||||| ||||||| |||||||| ||||||||| Sbjct 62 TTCAGGTCCGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAG 3 Query 145807 GG 145808 || Sbjct 2 GG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567296066404440