Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq57974 295 8e-75 seq222065 109 6e-19 >seq57974 Length=13968 Score = 295 bits (326), Expect = 8e-75 Identities = 268/338 (79%), Gaps = 0/338 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 ||||||| |||||||| ||||| | | | | ||| | ||||| |||||||||||||| Sbjct 1848 AGCAGGGTTTCGATGTCAGGCTCGATGTCGATCGTCAGAAAGCGGCGGCTGTACCTGCGC 1907 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| |||||| | ||||||| |||||||||||||||||||| | |||||||||| Sbjct 1908 ACGGGCACGCCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGG 1967 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| |||| || |||||| ||| ||| | | |||||| || Sbjct 1968 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTG 2027 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 |||| ||||| ||||| || |||||||||||||||||||| ||| | | || || ||| Sbjct 2028 GGCGTAGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 2087 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| || || |||||||| ||| || || ||||||| |||| Sbjct 2088 TCGCACTTCTCGAAGAGCATGAAATTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 2147 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394 ||| || || |||||| | |||| |||||||||||| Sbjct 2148 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 2185 Score = 168 bits (186), Expect = 8e-37 Identities = 162/208 (78%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| |||| Sbjct 2447 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGTCCCCGGGGTCCGAGGC 2506 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || |||| Sbjct 2507 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 2566 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 ||||||| ||||||| ||| |||||| | | || | | | | || || || |||| Sbjct 2567 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 2626 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | ||||| || |||||||||||||| Sbjct 2627 CCAGAGGGCGCGCAGAGAAGGCGTACAC 2654 >seq222065 Length=31664 Score = 109 bits (120), Expect = 6e-19 Identities = 189/267 (71%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| ||| Sbjct 21505 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 21563 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || ||||||||||| |||||||||| || ||| | ||||||| Sbjct 21564 TGGTGCACCTGTTCCCGGAGCTCTTTACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 21623 Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| ||| ||| ||||| || | | |||| ||||| Sbjct 21624 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCATCCCGTATCAAGCTCATCCGCCACTAC 21682 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646 |||||| |||| |||| ||| || || || || |||| ||| ||||| ||| Sbjct 21683 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 21741 Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673 ||||||||||| ||||||||||| Sbjct 21742 CAAACTGGACGAGCGTTGCCGGCGCCG 21768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 585293354830440