Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq57974 295 8e-75
seq222065 109 6e-19
>seq57974
Length=13968
Score = 295 bits (326), Expect = 8e-75
Identities = 268/338 (79%), Gaps = 0/338 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
||||||| |||||||| ||||| | | | | ||| | ||||| ||||||||||||||
Sbjct 1848 AGCAGGGTTTCGATGTCAGGCTCGATGTCGATCGTCAGAAAGCGGCGGCTGTACCTGCGC 1907
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176
|||||| |||||| | ||||||| |||||||||||||||||||| | ||||||||||
Sbjct 1908 ACGGGCACGCCGTCTGGGCCCACCAGGAACTTCTCGAAGTTCCAGGAGATGTCGTTGCGG 1967
Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236
||||| || ||||||| |||| || |||||| ||| ||| | | |||||| ||
Sbjct 1968 CACACCGGGGACCAGGTGATGAACTTAGGGTCGGTCATGAGAGCAGTGGCGTCGTCACTG 2027
Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296
|||| ||||| ||||| || |||||||||||||||||||| ||| | | || || |||
Sbjct 2028 GGCGTAGGCAGAGCCTCCCGAAGGAAGGCGAAGAGCGGATGCGCCTTCTCGCCATTCACC 2087
Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356
|||||||||||||||||||| || || |||||||| ||| || || ||||||| ||||
Sbjct 2088 TCGCACTTCTCGAAGAGCATGAAATTGGGCTCGAACCCGCCGCCTGGTCGGACGTACTTC 2147
Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTG 83394
||| || || |||||| | |||| ||||||||||||
Sbjct 2148 AGGCAATTCAGGATCTCCTCGTTCTTGGCGTTTTCCTG 2185
Score = 168 bits (186), Expect = 8e-37
Identities = 162/208 (78%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450
|||| || || |||||||| |||||||| || ||||| ||||| ||||| | ||| ||||
Sbjct 2447 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACGACCAGTCCCCGGGGTCCGAGGC 2506
Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510
|||||||||| || |||||||| ||||| ||||| ||||| | |||||||| || ||||
Sbjct 2507 GCCGCTGCAGGTCATTCATCTGGGTGTAGTCCCGCACCGTTGTGCCTCAGAGCGATGCTA 2566
Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570
||||||| ||||||| ||| |||||| | | || | | | | || || || ||||
Sbjct 2567 CGTTCTCAATGAGCAGCACCTTGCCCCGCAGGGAGGCCAGGTGGAAGGGCTCCCCGCCGG 2626
Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598
| ||||| || ||||||||||||||
Sbjct 2627 CCAGAGGGCGCGCAGAGAAGGCGTACAC 2654
>seq222065
Length=31664
Score = 109 bits (120), Expect = 6e-19
Identities = 189/267 (71%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468
||| ||||||| || |||| | ||| || ||| ||| |||||| || ||| |||
Sbjct 21505 GCAGCTGCGCAGCATCTACGAGAGCA-GCTTGTCCATCGGCAACTTTGCCTCGCGCCTGC 21563
Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528
| ||| || |||| || ||||||||||| |||||||||| || ||| | |||||||
Sbjct 21564 TGGTGCACCTGTTCCCGGAGCTCTTTACCCACGAGAACCTGCGCAAGCAGTACAACTGCA 21623
Query 50529 ACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587
||||||| |||||||| ||| ||| ||||| || | | |||| |||||
Sbjct 21624 GCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCATCCCGTATCAAGCTCATCCGCCACTAC 21682
Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCAC-AAAGTTCCTGGC 50646
|||||| |||| |||| ||| || || || || |||| ||| ||||| |||
Sbjct 21683 GTGCAGCTGCTCTACCCACGGGCCAAGAATGACCGTGTCTGGA-CACTGGAGTTCGTGGG 21741
Query 50647 GTGCCTGGACGAGCGCTGCCGGCGCCG 50673
||||||||||| |||||||||||
Sbjct 21742 CAAACTGGACGAGCGTTGCCGGCGCCG 21768
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 585293354830440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |