Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq3087926 150 5e-32 seq3087822 138 3e-28 >seq3087926 Length=6391 Score = 150 bits (166), Expect = 5e-32 Identities = 644/981 (66%), Gaps = 55/981 (6%) Strand=Plus/Minus Query 13389 CTTCCGGCGAAGTCCATCTGGTGGCAGGGGGAGGAGTATAAAGCCTGGCCGTGTCAGGTT 13448 || ||||| ||||| || ||||||||||| | ||||| ||||||||| || || Sbjct 5870 CTGCCGGCTAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGGCCTGGCCGGTGCAAATT 5811 Query 13449 GAGGGTATTGAAGCGACCACGGACGGTACTAGTCCACA-GCC--AAAACTGACGGTGGCG 13505 || ||||| | | | || ||||| || || |||| ||| | | || || ||| Sbjct 5810 GAAGGTATCGGTTCCAGCAGCGACGGAAC-AG-CCACTCGCCCGACATTTGCCGCCGGC- 5754 Query 13506 AACCTCGACAGCTCTATCTCGGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAA 13565 ||| || | | | || | ||||| || ||||||| || || |||||| || || Sbjct 5753 AACATCAATGGGCGTGTCACAGCGCTGTGCCTGGCGTTCGAGGACCTGCTGAAGTTCAAG 5694 Query 13566 GTCACTATCCATGACACGCTGGCGAAGTATCTGGATGCCAGAAACTTTCCGCAGGGTAAC 13625 ||||| ||| || ||| ||||| ||||||||||||| |||| ||| |||| || Sbjct 5693 CTCACTGTCCGCGAGACGTTGGCGCAGTATCTGGATGCAGCGAACTACCCGGAGGGCAAT 5634 Query 13626 CCCACCGCAGATCCGTCACAGGAAAAGCTGAAGGTCTTTTATATTGACGCCAGAAA--CA 13683 || || ||||| || | ||||| |||| || ||| || || ||| ||||| || Sbjct 5633 CCGACTGCAGACTCGACCCAGGAGGCGCTGGAGATCTGGTACATCGAC--CAGAAGACCA 5576 Query 13684 CCGAG-ACGG--ATGAAGTGGT--GGAATTTATCCTTTCCAGCCCGATGGATTTACAGGG 13738 |||| |||| | | ||||| || | | || | ||| | || ||| ||| Sbjct 5575 GCGAGGACGGCGAGGCGGTGGTCTGGGAGCTGTCGTCTCCTGGT-GA--GATCGACAACC 5519 Query 13739 CCGGATGATACCGACCCGGCAGCTGCATTCTCTGTGTTCCTGGTGCATCCGGAACAAA-- 13796 ||| | ||| | | ||| || | | || |||| ||| || ||| Sbjct 5518 ATGGACT-TCCCGGGC-GCCAGATGACGACGTTCTGCCACTGGGCCAT---GACCAATGG 5464 Query 13797 -TACCGAACCGGCGACGG-CTGCGACTACGCCGGAACGCGCTAT-TTCGACAAGCACAAT 13853 |||||| ||| ||| ||||| |||| |||| || || || |||||| | | | Sbjct 5463 TTACCGAG--GGC--CGGACTGCGGCTACACCGGCGCG-GCCATGTTCGACGACGAAGAC 5409 Query 13854 AACCCTGTTGACGATCCTTCGCTGGATGAATGCAACGGTACGCTGACGGCCTGCAAGCTG 13913 ||||| || ||||| | |||| | ||||| || ||| || |||||||| || Sbjct 5408 AACCCCACGGATGATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTG 5349 Query 13914 CGTCATGGAGACAGCAACGAGCTGCCGTTCGGCGGTTTCCCCGGTACATCCCTTAT---C 13970 || || || | |||||| ||| | || ||||| ||||||| || || || | Sbjct 5348 CGATTCGGCGAGAACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCC 5289 Query 13971 AGGAGCTGAT-ATGCGCCAGAAAACCATTGATGCCATCATGGCGCACGCCGCTGCGGAAT 14029 |||||||| |||||| || | | ||||| |||||| |||||| || || |||| | Sbjct 5288 CGGAGCTGACCATGCGCAAGCACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGT 5229 Query 14030 ATCCGCGCGAGTGCTGCGGCGTG--GTAGCGCAGAAAAGCCGGGTTGAGCGCTATTTCCC 14087 ||||||| |||||||||||| || || | || | |||| | || || ||||| Sbjct 5228 ATCCGCGAGAGTGCTGCGGCCTGCTGTTG-GCCG-TGGGCCGCGCGCAGAAGTACTTCCC 5171 Query 14088 CTGCCGCAACCTCTCAGCC---GAGCCGACAGAGCATTTTCACCTTTCTCCTGAAGACTA 14144 ||||| ||| | |||| ||||||| || | || | ||| || || ||||| Sbjct 5170 GTGCCGGAACAT---AGCCAAGGAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTA 5114 Query 14145 CGCAGCTGCCGAGGACTGGGGGACGGTGGTGGCCATTGTTCACAGCCACCCTGACGCCAC 14204 ||| || || || |||| ||| |||| | | ||| || ||| ||||| |||||||| Sbjct 5113 CGCCGCGGCGGAAGACTTGGGCGAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCAC 5054 Query 14205 GACACAGCCGAGCGAACTGGATAA---AGCGCAATGTGATGCAACGCTGCTGCCCTGGCA 14261 | ||| | | || | || | || ||||| || ||| |||| ||||| Sbjct 5053 CA-GCAG--GCCCTCACCGCATGACTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCA 4997 Query 14262 TATTGTGAGCTGGCCGGAGGGGGATTTACGCACTATTCAGCCGCGCGGGGAAC-TGCCGC 14320 || || ||||| ||||| || | ||||| ||| |||| ||||| | | ||||| Sbjct 4996 CATCCTGTCTTGGCCCGAGGGTGACTGGCGCACGATTACGCCG-GCGGGTAGCACGCCGC 4938 Query 14321 TACTGGAGCGCCCGTTCGTGC 14341 | || ||||||||||||||| Sbjct 4937 TGCTCAAGCGCCCGTTCGTGC 4917 >seq3087822 Length=6084 Score = 138 bits (152), Expect = 3e-28 Identities = 377/564 (67%), Gaps = 30/564 (5%) Strand=Plus/Minus Query 13815 TGCGACTACGCCGGAACGCGCTAT-TTCGACAA---GCACAATAACCCTGTTGACGATCC 13870 |||| |||| |||| || || || |||||| | | ||||| | | | |||| || Sbjct 2163 TGCGGCTACACCGGCGCG-GCCATGTTCGACGATGAGGACAATCCCACGGATGAC---CC 2108 Query 13871 TTCGCTGGATGAATGCAACGGTACGCTGACGGCCTGCAAGCTGCGTCATGGAGACAGCAA 13930 | |||| || | ||||| || ||| || |||||||| |||| || || | ||| Sbjct 2107 TGCGCTTGACCAGTGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAA 2048 Query 13931 CGAGCTGCCGTTCGGCGGTTTCCCCGGTACATCCCTTAT---CAGGAGCTGA-TATGCGC 13986 ||| ||| | ||||| || ||||||| ||||| || | |||||||| ||||||| Sbjct 2047 CGAACTGTCCTTCGGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGC 1988 Query 13987 CAGAAAACCATTGATGCCATCATGGCGCACGCCGCTGCGGAATATCCGCGCGAGTGCTGC 14046 || | | ||||| || || ||||||||| || ||||||||||||||||| |||||| Sbjct 1987 AAGCACATCATTGCCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGC 1928 Query 14047 GGCGTGGTAGC--GCAGAAAAGCCGGGTTGAGCGCTATTTCCCCTGCCGCAACCTCTCAG 14104 || || | || || | |||| | | || || ||||| ||||| ||| || | Sbjct 1927 GGGCTGCT-GCTGGCCG-TGGGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCA 1870 Query 14105 CCGAGCCGACAGAGCATTTTCACCTTTCTCCTGAAGACTACGCAGCTGCCGAGGACTGGG 14164 | ||||||| || | || | || ||| || | |||||| || || ||||||| || Sbjct 1869 CGGAGCCGAGCGAAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGG 1810 Query 14165 GGACGGTGGTGGCCATTGTTCACAGCCACCCTGACGCCACGACACAGCCG------AGCG 14218 | |||| | | || || ||| ||||| ||||| || |||||| | || Sbjct 1809 GCGAGGTGATCGGTATAGTCCACTCACACCCGGACGCAAC----CAGCCGCCCATCACCG 1754 Query 14219 AACTGGATAAAGCGCAATGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGG 14278 || || || ||||| || ||| |||||||||||||| | ||||| | Sbjct 1753 CAC--GACCTTGCCATGTGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCG 1696 Query 14279 AGGGGGATTTACGCACTATTCAGCCGCGCGGGGAAC-TGCCGCTACTGGAGCGCCCGTTC 14337 |||| || | ||||| | ||| | |||| | | |||||| || |||| |||||| Sbjct 1695 AGGGCGACATGCGCACGA-TCACGCCAACGGGCACCACGCCGCTGCTCAAGCGGCCGTTC 1637 Query 14338 GTGCTTGGCCACTTTGATTGCTGG 14361 || | || || ||||||||| Sbjct 1636 GTACACGGGGCCTGGGATTGCTGG 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142840131300134