Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001901.1
Length=46375
Score E
Sequences producing significant alignments: (Bits) Value
seq3087926 150 5e-32
seq3087822 138 3e-28
>seq3087926
Length=6391
Score = 150 bits (166), Expect = 5e-32
Identities = 644/981 (66%), Gaps = 55/981 (6%)
Strand=Plus/Minus
Query 13389 CTTCCGGCGAAGTCCATCTGGTGGCAGGGGGAGGAGTATAAAGCCTGGCCGTGTCAGGTT 13448
|| ||||| ||||| || ||||||||||| | ||||| ||||||||| || ||
Sbjct 5870 CTGCCGGCTAAGTCGATTTGGTGGCAGGGTGCCGAGTACGCGGCCTGGCCGGTGCAAATT 5811
Query 13449 GAGGGTATTGAAGCGACCACGGACGGTACTAGTCCACA-GCC--AAAACTGACGGTGGCG 13505
|| ||||| | | | || ||||| || || |||| ||| | | || || |||
Sbjct 5810 GAAGGTATCGGTTCCAGCAGCGACGGAAC-AG-CCACTCGCCCGACATTTGCCGCCGGC- 5754
Query 13506 AACCTCGACAGCTCTATCTCGGCGCTCTGTCTGGCGTATGACGATCTGCTGCAGGCGAAA 13565
||| || | | | || | ||||| || ||||||| || || |||||| || ||
Sbjct 5753 AACATCAATGGGCGTGTCACAGCGCTGTGCCTGGCGTTCGAGGACCTGCTGAAGTTCAAG 5694
Query 13566 GTCACTATCCATGACACGCTGGCGAAGTATCTGGATGCCAGAAACTTTCCGCAGGGTAAC 13625
||||| ||| || ||| ||||| ||||||||||||| |||| ||| |||| ||
Sbjct 5693 CTCACTGTCCGCGAGACGTTGGCGCAGTATCTGGATGCAGCGAACTACCCGGAGGGCAAT 5634
Query 13626 CCCACCGCAGATCCGTCACAGGAAAAGCTGAAGGTCTTTTATATTGACGCCAGAAA--CA 13683
|| || ||||| || | ||||| |||| || ||| || || ||| ||||| ||
Sbjct 5633 CCGACTGCAGACTCGACCCAGGAGGCGCTGGAGATCTGGTACATCGAC--CAGAAGACCA 5576
Query 13684 CCGAG-ACGG--ATGAAGTGGT--GGAATTTATCCTTTCCAGCCCGATGGATTTACAGGG 13738
|||| |||| | | ||||| || | | || | ||| | || ||| |||
Sbjct 5575 GCGAGGACGGCGAGGCGGTGGTCTGGGAGCTGTCGTCTCCTGGT-GA--GATCGACAACC 5519
Query 13739 CCGGATGATACCGACCCGGCAGCTGCATTCTCTGTGTTCCTGGTGCATCCGGAACAAA-- 13796
||| | ||| | | ||| || | | || |||| ||| || |||
Sbjct 5518 ATGGACT-TCCCGGGC-GCCAGATGACGACGTTCTGCCACTGGGCCAT---GACCAATGG 5464
Query 13797 -TACCGAACCGGCGACGG-CTGCGACTACGCCGGAACGCGCTAT-TTCGACAAGCACAAT 13853
|||||| ||| ||| ||||| |||| |||| || || || |||||| | | |
Sbjct 5463 TTACCGAG--GGC--CGGACTGCGGCTACACCGGCGCG-GCCATGTTCGACGACGAAGAC 5409
Query 13854 AACCCTGTTGACGATCCTTCGCTGGATGAATGCAACGGTACGCTGACGGCCTGCAAGCTG 13913
||||| || ||||| | |||| | ||||| || ||| || |||||||| ||
Sbjct 5408 AACCCCACGGATGATCCGGCCAAGGATCAGTGCAAGGGCTGCCTGTCGTCCTGCAAGTTG 5349
Query 13914 CGTCATGGAGACAGCAACGAGCTGCCGTTCGGCGGTTTCCCCGGTACATCCCTTAT---C 13970
|| || || | |||||| ||| | || ||||| ||||||| || || || |
Sbjct 5348 CGATTCGGCGAGAACAACGAACTGTCCTTTGGCGGATTCCCCGCCGTGTCTCTCATTGCC 5289
Query 13971 AGGAGCTGAT-ATGCGCCAGAAAACCATTGATGCCATCATGGCGCACGCCGCTGCGGAAT 14029
|||||||| |||||| || | | ||||| |||||| |||||| || || |||| |
Sbjct 5288 CGGAGCTGACCATGCGCAAGCACATCATTGCGGCCATCCAGGCGCATGCGGCGACGGAGT 5229
Query 14030 ATCCGCGCGAGTGCTGCGGCGTG--GTAGCGCAGAAAAGCCGGGTTGAGCGCTATTTCCC 14087
||||||| |||||||||||| || || | || | |||| | || || |||||
Sbjct 5228 ATCCGCGAGAGTGCTGCGGCCTGCTGTTG-GCCG-TGGGCCGCGCGCAGAAGTACTTCCC 5171
Query 14088 CTGCCGCAACCTCTCAGCC---GAGCCGACAGAGCATTTTCACCTTTCTCCTGAAGACTA 14144
||||| ||| | |||| ||||||| || | || | ||| || || |||||
Sbjct 5170 GTGCCGGAACAT---AGCCAAGGAGCCGAACGAAGAGTTCCGGCTTGACCCCGAGGACTA 5114
Query 14145 CGCAGCTGCCGAGGACTGGGGGACGGTGGTGGCCATTGTTCACAGCCACCCTGACGCCAC 14204
||| || || || |||| ||| |||| | | ||| || ||| ||||| ||||||||
Sbjct 5113 CGCCGCGGCGGAAGACTTGGGCGAGGTGATCGGCATCGTCCACTCGCACCCGGACGCCAC 5054
Query 14205 GACACAGCCGAGCGAACTGGATAA---AGCGCAATGTGATGCAACGCTGCTGCCCTGGCA 14261
| ||| | | || | || | || ||||| || ||| |||| |||||
Sbjct 5053 CA-GCAG--GCCCTCACCGCATGACTTGGCCATGTGTGAGGCCACGGCTTTGCCATGGCA 4997
Query 14262 TATTGTGAGCTGGCCGGAGGGGGATTTACGCACTATTCAGCCGCGCGGGGAAC-TGCCGC 14320
|| || ||||| ||||| || | ||||| ||| |||| ||||| | | |||||
Sbjct 4996 CATCCTGTCTTGGCCCGAGGGTGACTGGCGCACGATTACGCCG-GCGGGTAGCACGCCGC 4938
Query 14321 TACTGGAGCGCCCGTTCGTGC 14341
| || |||||||||||||||
Sbjct 4937 TGCTCAAGCGCCCGTTCGTGC 4917
>seq3087822
Length=6084
Score = 138 bits (152), Expect = 3e-28
Identities = 377/564 (67%), Gaps = 30/564 (5%)
Strand=Plus/Minus
Query 13815 TGCGACTACGCCGGAACGCGCTAT-TTCGACAA---GCACAATAACCCTGTTGACGATCC 13870
|||| |||| |||| || || || |||||| | | ||||| | | | |||| ||
Sbjct 2163 TGCGGCTACACCGGCGCG-GCCATGTTCGACGATGAGGACAATCCCACGGATGAC---CC 2108
Query 13871 TTCGCTGGATGAATGCAACGGTACGCTGACGGCCTGCAAGCTGCGTCATGGAGACAGCAA 13930
| |||| || | ||||| || ||| || |||||||| |||| || || | |||
Sbjct 2107 TGCGCTTGACCAGTGCAAGGGCTGTCTGTCGTCCTGCAAGTTGCGCTTCGGCGAAAACAA 2048
Query 13931 CGAGCTGCCGTTCGGCGGTTTCCCCGGTACATCCCTTAT---CAGGAGCTGA-TATGCGC 13986
||| ||| | ||||| || ||||||| ||||| || | |||||||| |||||||
Sbjct 2047 CGAACTGTCCTTCGGTGGATTCCCCGCCGTTTCCCTGATTGTCCGGAGCTGACTATGCGC 1988
Query 13987 CAGAAAACCATTGATGCCATCATGGCGCACGCCGCTGCGGAATATCCGCGCGAGTGCTGC 14046
|| | | ||||| || || ||||||||| || ||||||||||||||||| ||||||
Sbjct 1987 AAGCACATCATTGCCGCTATTCAGGCGCACGCGGCGGCGGAATATCCGCGCGAATGCTGC 1928
Query 14047 GGCGTGGTAGC--GCAGAAAAGCCGGGTTGAGCGCTATTTCCCCTGCCGCAACCTCTCAG 14104
|| || | || || | |||| | | || || ||||| ||||| ||| || |
Sbjct 1927 GGGCTGCT-GCTGGCCG-TGGGCCGCGCTCAGAAGTACTTCCCGTGCCGGAACATCGCCA 1870
Query 14105 CCGAGCCGACAGAGCATTTTCACCTTTCTCCTGAAGACTACGCAGCTGCCGAGGACTGGG 14164
| ||||||| || | || | || ||| || | |||||| || || ||||||| ||
Sbjct 1869 CGGAGCCGAGCGAAGAGTTCAAGCTCGATCCCGAGGGCTACGCTGCGGCAGAGGACTTGG 1810
Query 14165 GGACGGTGGTGGCCATTGTTCACAGCCACCCTGACGCCACGACACAGCCG------AGCG 14218
| |||| | | || || ||| ||||| ||||| || |||||| | ||
Sbjct 1809 GCGAGGTGATCGGTATAGTCCACTCACACCCGGACGCAAC----CAGCCGCCCATCACCG 1754
Query 14219 AACTGGATAAAGCGCAATGTGATGCAACGCTGCTGCCCTGGCATATTGTGAGCTGGCCGG 14278
|| || || ||||| || ||| |||||||||||||| | ||||| |
Sbjct 1753 CAC--GACCTTGCCATGTGTGAGGCCACGGCCGTGCCCTGGCATATTCTCTCGTGGCCCG 1696
Query 14279 AGGGGGATTTACGCACTATTCAGCCGCGCGGGGAAC-TGCCGCTACTGGAGCGCCCGTTC 14337
|||| || | ||||| | ||| | |||| | | |||||| || |||| ||||||
Sbjct 1695 AGGGCGACATGCGCACGA-TCACGCCAACGGGCACCACGCCGCTGCTCAAGCGGCCGTTC 1637
Query 14338 GTGCTTGGCCACTTTGATTGCTGG 14361
|| | || || |||||||||
Sbjct 1636 GTACACGGGGCCTGGGATTGCTGG 1613
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 142840131300134
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |