Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq300236 136 4e-27 seq66256 114 1e-20 seq136426 107 2e-18 seq141641 105 7e-18 seq28392 105 7e-18 seq1887490 98.7 1e-15 seq1559739 98.7 1e-15 seq155098 96.9 3e-15 seq2340502 89.7 5e-13 seq383866 87.8 2e-12 seq185925 87.8 2e-12 seq2409662 84.2 2e-11 seq1715084 84.2 2e-11 seq237091 84.2 2e-11 seq142543 84.2 2e-11 >seq300236 Length=7644 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || ||||| || ||||||||||| | || || || ||| Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | | |||||| || || | || |||||||||||||| | ||||| Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | | |||| ||||| ||||||||||| || | ||||||||| |||||||| Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||||||||| ||| |||| ||||| || || | ||| | || || || Sbjct 7593 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640 >seq66256 Length=6617 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| | || || || || Sbjct 1414 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCC 1473 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | | | |||| | |||| || || | || || || ||||| ||| | || Sbjct 1474 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1532 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | ||||||| || |||| |||||||| || | ||||| || || || Sbjct 1533 CCAGCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1592 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| ||| || ||||| || || | | ||||||| ||| Sbjct 1593 CAACATCCAGAAAGAGTAGACCCTGCACCTGGTCCTTCATCTGAGGGGTGGC 1644 >seq136426 Length=23094 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 11/231 (5%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||| | || || | || || || ||||||||| | || || || ||| Sbjct 21078 ATGCAGATCTTCATGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 21137 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG---CGGA 40805 |||| | | | || || ||||| || || | ||||||||| |||| |||| Sbjct 21138 GACATCATCGAGAATGC-CAAGGCCAAGATCC------AAGAGGGCACCCCCCACCCGGA 21190 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| | | |||| || || ||||||||||| || | || |||||| ||||| Sbjct 21191 CCAGCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGACTA 21250 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||||| ||| |||| ||||| | || ||||||||||||| || Sbjct 21251 CAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 21301 >seq141641 Length=332 Score = 105 bits (116), Expect = 7e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || || ||| | || || |||||||| || || || || || || |||||| || Sbjct 104 GAACCACTTCTGAGAGAAAATCCCCGCCGCTTTGTCATCTTTCCTATTAAATACCATGAT 163 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| ||||| || || || ||||| || || ||||| | |||||||||||||| Sbjct 164 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTT 223 Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||||| ||| ||||||| | |||| | ||| | |||| || || Sbjct 224 TCCAAGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTGAGGAGAGAGATTTTATTTCCCA 282 Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804 |||||||| || || || || || || ||||| || || || ||| ||| Sbjct 283 TGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGG 332 >seq28392 Length=738 Score = 105 bits (116), Expect = 7e-18 Identities = 213/316 (67%), Gaps = 0/316 (0%) Strand=Plus/Minus Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118 || || ||| |||||||||| || ||| || | ||||| |||||||||||||| || Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336 Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178 || ||||| ||||| || || || || || || ||| || |||||| |||| || Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276 Query 117179 GACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG 117238 ||||||||||| | ||||||| || || |||| ||| | | | || | Sbjct 275 GACTTTGCCTGCCTTATGTTCAAACACCTGTTGCACAAACCTTCGGAACAGAGAGTAAAA 216 Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298 || || || | | || || || || ||| |||||||| || || ||||| ||| Sbjct 215 GAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCTGTG 156 Query 117299 CGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358 || | || | || ||| |||| ||| |||||||||||||| || || || Sbjct 155 AAGCTCATTGGGATGAAGTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGA 96 Query 117359 CTGCTGCTCGAGCTGG 117374 || |||| ||||||| Sbjct 95 CTTATGCTGGAGCTGG 80 >seq1887490 Length=127 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | |||||||||||||||||| | |||||||| || | |||| | Sbjct 15 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGATTGATCTTTG 74 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 | || ||||||||||| || | ||||||||| ||||||||||||||||| Sbjct 75 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 126 >seq1559739 Length=125 Score = 98.7 bits (108), Expect = 1e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | |||||||||||||||||| | |||||||| | || |||| | Sbjct 112 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTG 53 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 | || ||||||||||| || | ||||||||| ||||||||||||||||| Sbjct 52 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 1 >seq155098 Length=7669 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || || || || || || ||||| || |||||||| |||| |||||| || Sbjct 7440 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 7381 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | ||| || || | || || || || || || | ||| Sbjct 7380 TCGGATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 7321 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| ||| |||| || ||||| || ||||| || || || || | |||||| Sbjct 7320 CAGCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTAC 7261 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 | ||| || |||||| |||| || |||||||||||| Sbjct 7260 AGCATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 7225 >seq2340502 Length=142 Score = 89.7 bits (98), Expect = 5e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | ||||||||||||||||| | |||||||| | | |||| | Sbjct 30 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGAGGTTGATCTTTG 89 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 | || ||||||||||| || | ||||||||| ||||||||||||||||| Sbjct 90 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 141 >seq383866 Length=17248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890 ||||||||||| || | ||||||||| ||||||||||||||||||||| |||| ||| Sbjct 1 AAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTG 60 Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916 || | || ||||||||||||| || Sbjct 61 CACTTGGTCCTGCGCTTGAGGGGAGG 86 >seq185925 Length=7279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||| | || || || ||||| || |||||||| | || |||||| || Sbjct 519 AAGATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 460 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 || | | ||| | |||| || || | || || || || || || | ||| Sbjct 459 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 400 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| ||| |||| || ||||| || ||||| || | | || | |||||| Sbjct 399 CAGCAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 340 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || |||||||||||| Sbjct 339 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 304 >seq2409662 Length=152 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || || || ||||| ||| | |||||||| | ||||||| || ||||| |||||||| Sbjct 134 GATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAA 75 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || || |||||||||||||| ||| | || ||||| || || | Sbjct 74 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTT 15 Query 40903 CGCTTGAGGGGCGG 40916 || ||||||| || Sbjct 14 CGTCTGAGGGGTGG 1 >seq1715084 Length=127 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825 |||||| || || | |||||||||||||||||| |||||||||| | | |||| | Sbjct 27 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGACCAGCAGAGGTTGATCTTTG 86 Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCT 40856 |||| ||||||||||| || | ||||||||| Sbjct 87 CGGGGAAACAGCTGGAAGATGGGCGCACCCT 117 >seq237091 Length=19548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851 |||||||| | |||||||| || || |||| |||||||||||||||||| || | |||| Sbjct 6879 GGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGGCGC 6820 Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877 || || |||||||| |||||||| Sbjct 6819 ACTCTGTCAGACTACAATATCCAGAA 6794 >seq142543 Length=7870 Score = 84.2 bits (92), Expect = 2e-11 Identities = 93/124 (75%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 |||||||||| || || || || || | ||||| || || ||| || || ||||| | Sbjct 6892 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCTGCTATATTCT 6833 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| |||||| | || ||||||||||| || ||||| ||| ||||||||| ||| | Sbjct 6832 GGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGCAGAG 6773 Query 117162 ACGA 117165 | || Sbjct 6772 ATGA 6769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495328447917360