Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq300236 136 4e-27
seq66256 114 1e-20
seq136426 107 2e-18
seq141641 105 7e-18
seq28392 105 7e-18
seq1887490 98.7 1e-15
seq1559739 98.7 1e-15
seq155098 96.9 3e-15
seq2340502 89.7 5e-13
seq383866 87.8 2e-12
seq185925 87.8 2e-12
seq2409662 84.2 2e-11
seq1715084 84.2 2e-11
seq237091 84.2 2e-11
seq142543 84.2 2e-11
>seq300236
Length=7644
Score = 136 bits (150), Expect = 4e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || || ||||| || ||||| || ||||||||||| | || || || |||
Sbjct 7413 AATGCAGATCTTTGTAAAGACCCTCACTGGTAAAACCATCACTCTGGAGGTGGAGCCCAG 7472
Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | | |||||| || || | || |||||||||||||| | |||||
Sbjct 7473 TGACACCATTGAGAATGTCAAGGGGAAGATACAAGAAAAAGAGGGCATCCCTCCAGACCA 7532
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | | |||| ||||| ||||||||||| || | ||||||||| ||||||||
Sbjct 7533 GCAGAGGTTGATCTTTGCGGGGAAACAGCTGGAAGATGGGCGCACCCTTTCTGACTACAA 7592
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||||||||| ||| |||| ||||| || || | ||| | || || ||
Sbjct 7593 CATCCAGAAAGAGTCCACTCTGCACCTGGTCCTCCGCCTCAGAGGTGG 7640
>seq66256
Length=6617
Score = 114 bits (126), Expect = 1e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
||||||||||| ||||| || || || || ||||| ||||||||| | || || || ||
Sbjct 1414 AAAATGCAAATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTAGAGCCC 1473
Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805
| |||| | | | |||| | |||| || || | || || || ||||| ||| | ||
Sbjct 1474 AGTGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGA 1532
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | ||||||| || |||| |||||||| || | ||||| || || ||
Sbjct 1533 CCAGCAGAGGCTCATCTTTGCCAGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGATTA 1592
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
|||||||||||| ||| || ||||| || || | | ||||||| |||
Sbjct 1593 CAACATCCAGAAAGAGTAGACCCTGCACCTGGTCCTTCATCTGAGGGGTGGC 1644
>seq136426
Length=23094
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 11/231 (5%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||| | || || | || || || ||||||||| | || || || |||
Sbjct 21078 ATGCAGATCTTCATGAAGACCTTGACTGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 21137
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCG---CGGA 40805
|||| | | | || || ||||| || || | ||||||||| |||| ||||
Sbjct 21138 GACATCATCGAGAATGC-CAAGGCCAAGATCC------AAGAGGGCACCCCCCACCCGGA 21190
Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865
|||||| | | |||| || || ||||||||||| || | || |||||| |||||
Sbjct 21191 CCAGCAGAGGTTGATCTTTGCAGGGAAACAGCTGGAAGATGGGCACACCCTGTCTGACTA 21250
Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
|||||||||||| ||| |||| ||||| | || ||||||||||||| ||
Sbjct 21251 CAACATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGAGG 21301
>seq141641
Length=332
Score = 105 bits (116), Expect = 7e-18
Identities = 163/230 (71%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || || ||| | || || |||||||| || || || || || || |||||| ||
Sbjct 104 GAACCACTTCTGAGAGAAAATCCCCGCCGCTTTGTCATCTTTCCTATTAAATACCATGAT 163
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| ||||| || || || ||||| || || ||||| | ||||||||||||||
Sbjct 164 ATTTGGCAGATGTATAAGAAAGCTGAGGCTTCCTTTTGGACAGCTGAGGAGGTGGACCTT 223
Query 116696 TCCAAGGACA-CGAGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
|||||||||| ||| ||||||| | |||| | ||| | |||| || ||
Sbjct 224 TCCAAGGACATTCAGC-ACTGGGAAGCCCTGAAGCCTGAGGAGAGAGATTTTATTTCCCA 282
Query 116755 CGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGG 116804
|||||||| || || || || || || ||||| || || || ||| |||
Sbjct 283 TGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATTTGG 332
>seq28392
Length=738
Score = 105 bits (116), Expect = 7e-18
Identities = 213/316 (67%), Gaps = 0/316 (0%)
Strand=Plus/Minus
Query 117059 GTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGC 117118
|| || ||| |||||||||| || ||| || | ||||| |||||||||||||| ||
Sbjct 395 GTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCGTCGATATTCTGGCTCAAGAAACGAGGA 336
Query 117119 CTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGC 117178
|| ||||| ||||| || || || || || || ||| || |||||| |||| ||
Sbjct 335 CTGATGCCTGGCCTCACGTTTTCCAGTGAACTTATTAGCAGAGATGAGGGTTTGCACTGT 276
Query 117179 GACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGG 117238
||||||||||| | ||||||| || || |||| ||| | | | || |
Sbjct 275 GACTTTGCCTGCCTTATGTTCAAACACCTGTTGCACAAACCTTCGGAACAGAGAGTAAAA 216
Query 117239 GAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTG 117298
|| || || | | || || || || ||| |||||||| || || ||||| |||
Sbjct 215 GAAATAATCGTCAATGCAGTTAGGATAGAACAGGAGTTCCTCACGGAGGCCCTGCCTGTG 156
Query 117299 CGTCTGCTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGG 117358
|| | || | || ||| |||| ||| |||||||||||||| || || ||
Sbjct 155 AAGCTCATTGGGATGAAGTGCACTTTGATGAAGCAGTACATCGAGTTCGTGGCAGATAGA 96
Query 117359 CTGCTGCTCGAGCTGG 117374
|| |||| |||||||
Sbjct 95 CTTATGCTGGAGCTGG 80
>seq1887490
Length=127
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | |||||||||||||||||| | |||||||| || | |||| |
Sbjct 15 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGATTGATCTTTG 74
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
| || ||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 75 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 126
>seq1559739
Length=125
Score = 98.7 bits (108), Expect = 1e-15
Identities = 89/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | |||||||||||||||||| | |||||||| | || |||| |
Sbjct 112 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCAGACCAGCAGAGGCTGATCTTTG 53
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
| || ||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 52 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 1
>seq155098
Length=7669
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || || || || || || ||||| || |||||||| |||| |||||| ||
Sbjct 7440 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 7381
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | ||| | ||| || || | || || || || || || | |||
Sbjct 7380 TCGGATACAATAGAAAATGTAAAGACCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 7321
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|||||| ||| |||| || ||||| || ||||| || || || || | ||||||
Sbjct 7320 CAGCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGATGAACGTACTTTGTCTGACTAC 7261
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
| ||| || |||||| |||| || ||||||||||||
Sbjct 7260 AGCATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 7225
>seq2340502
Length=142
Score = 89.7 bits (98), Expect = 5e-13
Identities = 87/112 (78%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | ||||||||||||||||| | |||||||| | | |||| |
Sbjct 30 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCACCAGACCAGCAGAGGTTGATCTTTG 89
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
| || ||||||||||| || | ||||||||| |||||||||||||||||
Sbjct 90 CAGGGAAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAA 141
>seq383866
Length=17248
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 40831 AAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTG 40890
||||||||||| || | ||||||||| ||||||||||||||||||||| |||| |||
Sbjct 1 AAACAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACTCTG 60
Query 40891 CATCTAGTGTTGCGCTTGAGGGGCGG 40916
|| | || ||||||||||||| ||
Sbjct 61 CACTTGGTCCTGCGCTTGAGGGGAGG 86
>seq185925
Length=7279
Score = 87.8 bits (96), Expect = 2e-12
Identities = 149/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||| | || || || ||||| || |||||||| | || |||||| ||
Sbjct 519 AAGATGCAGATTTTCATGAAGACCCTGACGGGGAAGACCATCACTCTTGAGGTCGAACCC 460
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|| | | ||| | |||| || || | || || || || || || | |||
Sbjct 459 TTGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAC 400
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|||||| ||| |||| || ||||| || ||||| || | | || | ||||||
Sbjct 399 CAGCAAAGACAGATCTGTGCTGGCAAGCAACTGGAAGATGGACATACTTTGTCTGACTAC 340
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
||||| || |||||| |||| || ||||||||||||
Sbjct 339 AACATTCAAAAGGAGTCCACTCTTCATCTAGTGTTG 304
>seq2409662
Length=152
Score = 84.2 bits (92), Expect = 2e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| || || ||||| ||| | |||||||| | ||||||| || ||||| ||||||||
Sbjct 134 GATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAA 75
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || || |||||||||||||| ||| | || ||||| || || |
Sbjct 74 GATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCGACCCTGCACCTGGTCCTT 15
Query 40903 CGCTTGAGGGGCGG 40916
|| ||||||| ||
Sbjct 14 CGTCTGAGGGGTGG 1
>seq1715084
Length=127
Score = 84.2 bits (92), Expect = 2e-11
Identities = 73/91 (80%), Gaps = 0/91 (0%)
Strand=Plus/Plus
Query 40766 TCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACG 40825
|||||| || || | |||||||||||||||||| |||||||||| | | |||| |
Sbjct 27 TCAAGGCCAAGATCCAAGACAAAGAGGGCATCCCCCCGGACCAGCAGAGGTTGATCTTTG 86
Query 40826 CGGGCAAACAGCTGGACGACGAGCGCACCCT 40856
|||| ||||||||||| || | |||||||||
Sbjct 87 CGGGGAAACAGCTGGAAGATGGGCGCACCCT 117
>seq237091
Length=19548
Score = 84.2 bits (92), Expect = 2e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 40792 GGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGC 40851
|||||||| | |||||||| || || |||| |||||||||||||||||| || | ||||
Sbjct 6879 GGCATCCCACCTGACCAGCAGCGTCTGATCTTCGCGGGCAAACAGCTGGAGGATGGGCGC 6820
Query 40852 ACCCTCAACGACTACAACATCCAGAA 40877
|| || |||||||| ||||||||
Sbjct 6819 ACTCTGTCAGACTACAATATCCAGAA 6794
>seq142543
Length=7870
Score = 84.2 bits (92), Expect = 2e-11
Identities = 93/124 (75%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
|||||||||| || || || || || | ||||| || || ||| || || ||||| |
Sbjct 6892 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCCGGATCTTTTGCTGCTATATTCT 6833
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| |||||| | || ||||||||||| || ||||| ||| ||||||||| ||| |
Sbjct 6832 GGCTAAAGAAAAGAGGACTCATGCCCGGACTCACTTTTTCCAATGAGCTCATCAGCAGAG 6773
Query 117162 ACGA 117165
| ||
Sbjct 6772 ATGA 6769
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495328447917360
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