Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq66256 93.3 4e-14 seq155098 91.5 1e-13 >seq66256 Length=6617 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||||| || ||||||||||| | |||||| ||| || Sbjct 1625 ACCAGGTGCAGGGTCTACTCTTTCTGGATGTTGTAATCAGAAAGAGTGCGGCCATCTTCC 1566 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || | || ||||||| | |||||| || || || ||||| ||||| || Sbjct 1565 AGCTGCTTGCTGGCAAAGATGAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGG 1506 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| || ||| ||||| | ||| | || ||| Sbjct 1505 ATCTTGGCCTTCACGTTCTCGATGGTGTCACTGGGCTCTACCTCCAGGGTGATGGTCTTG 1446 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || || ||||| Sbjct 1445 CCGGTCAGGGTCTTCACGAAGATTTGCAT 1417 >seq155098 Length=7669 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||||||| | || | || ||||| ||||||||| |||| || || ||| || Sbjct 7222 TCTCAACACTAGATGAAGAGTGGACTCCTTTTGAATGCTGTAGTCAGACAAAGTACGTTC 7281 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || || || || ||||| |||| || ||||| || ||||| || || ||||| Sbjct 7282 ATCTTCCAGTTGCTTGCCAGCAAAGATCAGTATTTGCTGGTCAGGAGGAATTCCTTCCTT 7341 Query 118643 GTC-TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCA 118701 || || | || | |||| | | ||| | || |||| | |||||||||| || | Sbjct 7342 ATCCTGGATCTTGGTCTTTA-CATTTTCTATTGTATCCGAGGGTTCGACCTCGAGAGTGA 7400 Query 118702 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || ||||| || || |||||||||||||| Sbjct 7401 TGGTCTTCCCCGTCAGGGTCTTCACAAAAATCTGCAT 7437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417500491081612