Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_002484.2
Length=56426
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 114 4e-21
seq3047186 113 2e-20
seq366846 113 2e-20
seq322084 107 7e-19
seq3023355 104 8e-18
seq303408 100 1e-16
seq3083733 95.1 4e-15
seq3087082 86.0 2e-12
seq2815396 86.0 2e-12
seq2686037 84.2 8e-12
seq2645378 84.2 8e-12
seq1087588 84.2 8e-12
seq221954 84.2 8e-12
seq3056642 80.6 9e-11
seq1824633 80.6 9e-11
>seq3088379
Length=10556
Score = 114 bits (126), Expect = 4e-21
Identities = 214/312 (69%), Gaps = 12/312 (4%)
Strand=Plus/Plus
Query 588 TCAAGTTCATGCAGCTCATGCCTCACACCAAAGGCAAATGGAGCGCTTCGAAGTCGAAGC 647
||||| | |||||||| | || |||||||| ||| | ||| || | ||| |||
Sbjct 596 TCAAGCTGATGCAGCTTCTACCGCACACCAAGGGCGAGTGG---GCATTCAAGCGTCAGC 652
Query 648 TAGT---GTTCGAGCCTTGGCAGGTATTCATCGAGGCCAACATCTTCGGCTGGGTGAAGA 704
| | | |||||||||||||| | || | ||| | ||||||||||| ||||
Sbjct 653 TGATCACGCTCGAGCCTTGGCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGGGTAAAGA 712
Query 705 GGGACACCGGCAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATTCCCAGGAAGAACGGGA 764
| | ||| | ||| ||||||| || |||| || | ||||| || ||||| |
Sbjct 713 AGAAGGGCGGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCA 772
Query 765 AGTCGGCCCGTCTTGCCGCACGAG---GCATTTACCTATTCGCCGCCGATGGCGAGTCGG 821
| |||| | |||||| | | |||| | | |||| |||||||||||||| |
Sbjct 773 AATCGGT---TGTTGCCGGTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCG 829
Query 822 GGGCCGAGGTCTACTCCGGCGCCACCACCGAGAAGCAGGCCTTCGAGGTTTTCCGTCCGG 881
| |||||||| ||| | || || ||||| ||||| ||||||| ||||||||||| || |
Sbjct 830 GCGCCGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTG 889
Query 882 CGTGGATGATGG 893
| | ||||||
Sbjct 890 CCAAGCTGATGG 901
Score = 96.9 bits (106), Expect = 1e-15
Identities = 109/145 (75%), Gaps = 6/145 (4%)
Strand=Plus/Plus
Query 4872 GCGTCGACTGACCATCCGCGACCTGGTTGCGC---CTGGCACCACTGAGTCGAACTCCGT 4928
||| || ||||||||||| |||||| | |||| | |||| ||| || || || |
Sbjct 4481 GCGCCGGCTGACCATCCGTGACCTGCTGGCGCAAGGTCGCACGACT---TCCGACGCCAT 4537
Query 4929 CGAGTACGTCCGCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTCGGAAGGCACCCA 4988
||||||||| ||||||| || ||| |||||| |||||||| || | || ||||| |
Sbjct 4538 CGAGTACGTGCGCGAGAACGTATTCATCAACAGCGCCGCTCCGGTCGCCGAGGGCACGCT 4597
Query 4989 GAAGCCATACTCCGACCTGACCTTC 5013
|||||| | ||| |||||||||||
Sbjct 4598 GAAGCCCGAGTCCAACCTGACCTTC 4622
>seq3047186
Length=1103
Score = 113 bits (124), Expect = 2e-20
Identities = 157/220 (71%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982
|||||| ||| || ||||||||| | |||| | ||||||||||||| ||
Sbjct 717 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGCTCCCTGGAAC 776
Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042
||||| | |||||||||||| | |||| | || || ||||| || |||||||| |
Sbjct 777 AACGCCCCAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGG 836
Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102
|||| ||| | | ||||||||||||||||| || || ||| ||| | | || | |
Sbjct 837 ACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAAACGGAACACA 896
Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142
||||||| | ||| ||| | ||| | ||| | ||| ||||
Sbjct 897 AGGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 936
>seq366846
Length=1509
Score = 113 bits (124), Expect = 2e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982
|||||| ||| || ||||||||| | |||| | |||||||||||| ||
Sbjct 479 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAAC 420
Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042
|||||| | |||||||||||| | |||| | || || ||||| || |||||||| |
Sbjct 419 AACGCCCGAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGG 360
Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102
| || ||| | | ||||||||||||||||| || || ||| ||| | | || | |
Sbjct 359 ATGCTGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAACACA 300
Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGC 49152
| ||||| | ||||||| | ||| | ||| | ||| ||||| ||| |||
Sbjct 299 AAGGCATTGCCGAAATCATCATCGGCAAGCAGCGGAACGGACCAATTGGC 250
>seq322084
Length=21621
Score = 107 bits (118), Expect = 7e-19
Identities = 70/77 (91%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 24665 CATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGG 24724
|||||| ||||||||||||||||||||||| ||||||||||||||||||| | ||||||
Sbjct 12999 CATGCCGATCACCGAGCAGAAACTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 13058
Query 24725 CGTTTTTGTTGGTGCGC 24741
|||||||||| |||||
Sbjct 13059 CGTTTTTGTTTCTGCGC 13075
>seq3023355
Length=832
Score = 104 bits (114), Expect = 8e-18
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982
|||||| ||| || ||||||||| | |||| | |||||||||||| |||
Sbjct 597 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAGC 656
Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042
|| ||| | |||||||||||| | |||| | || || ||||| || |||||||| |
Sbjct 657 AACGGCCGAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 716
Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102
| || ||| | | ||||||||||||||||| || || ||| ||| | | || | |
Sbjct 717 ATGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCACA 776
Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142
| ||||| | ||| ||| | ||| | ||| | ||| ||||
Sbjct 777 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 816
>seq303408
Length=1829
Score = 100 bits (110), Expect = 1e-16
Identities = 274/413 (66%), Gaps = 19/413 (5%)
Strand=Plus/Minus
Query 10169 CGAGTGCGCTACCGCGTTCAACCCCGGTGGCAACCCTGCCGACCAGATCGAAACCACATG 10228
|||| ||| ||| ||||| | || || || || ||||| ||||||||| ||| |
Sbjct 1232 CGAGCACGCCACCTCGTTCGAACCGGGCGGTGCGCCGGCCGAACAGATCGAAGACACCAG 1173
Query 10229 CCTTA--GCGAAACTGTTCGGCGCTACCTGCGCGGCCTGCGCACGCCGGGACAGGCGTCG 10286
||| | || || | || ||||| || |||||||| || || |||
Sbjct 1172 CCTGAATGCCGAAGAG--CGCAGCTACAAAAAGGGTCTGCGCACCCCAGGCACCGCGAGC 1115
Query 10287 CTGACCCTCAACGCTGACCCGCGCAACAGTTCCCATATCCGCCTCTACCAACTGTCCGAG 10346
||| ||| ||||| ||||| |||| ||| |||||||| |||||||||||||
Sbjct 1114 CTGGGCCTGAACGCCGACCCTACCAACGCCAGCCACATCCGCCTGCACCAACTGTCCGAA 1055
Query 10347 TCCGACGACCAGATCGATCAGGACATCGCTTTCGCGGTTGGCTGGTCTGACGGTATTGGC 10406
|| | | | | || | || | | || || |||||||| ||||| | | |
Sbjct 1054 GCCAAGGGTGACACCGG-CGTGAAGTGG-----GCCGTGGGCTGGTCCGACGGCAAGGAC 1001
Query 10407 GTTGCACCAACCGAGGCACAGGACAGCAACGGTGATTGGGATTTCGTTCTTCCGCCGACG 10466
|| || |||| || ||| ||| |||||| || ||| | || ||| ||||
Sbjct 1000 GTACTGCCTACCGT----CA--ACACCAAAGGTGAT--GGCTTT-GAACTGCCGGCGACC 950
Query 10467 CGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCAAC 10526
|||||||||||| ||| |||||| || |||||||||||| | || ||| |||
Sbjct 949 CGCACCTGGTTCACGTTCGACGGCTACGTCTCGGACTTCCCGTTCAACTTCGCACTGAAC 890
Query 10527 GCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGAT 10579
|| || |||||| | |||| ||||| || ||| ||||||| |||||||||
Sbjct 889 GCGGTCGTGACCACCACCGTGACCATCCAACGCACCGGCGGCAGCGCCTGGAT 837
>seq3083733
Length=2771
Score = 95.1 bits (104), Expect = 4e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 24665 CATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGG 24724
|||||| |||||||||||| | ||||||| ||||||||||||||||||| | ||||||
Sbjct 2686 CATGCCGATCACCGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 2745
Query 24725 CGTTTTTGTTGGTGCGC 24741
|||||||||| |||||
Sbjct 2746 CGTTTTTGTTTCTGCGC 2762
>seq3087082
Length=4623
Score = 86.0 bits (94), Expect = 2e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 24663 GCCATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCC 24722
|| ||||||||||| |||||| | ||||||| ||||||||||||||||||| | ||||
Sbjct 3797 GCTATGCCCATCACTGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCC 3856
Query 24723 GGCGTTTTTGTT 24734
|||||||| |||
Sbjct 3857 GGCGTTTTCGTT 3868
>seq2815396
Length=244
Score = 86.0 bits (94), Expect = 2e-12
Identities = 151/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982
|||||| ||| || ||||||||| | |||| | ||||||||||| ||
Sbjct 242 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAAC 183
Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042
|| || | |||||||||||| | |||||| ||||| ||||| || |||||||| |
Sbjct 182 AGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAGG 123
Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102
| || ||| | | ||||| |||||||| || || || || ||| | | || | |
Sbjct 122 ATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACATA 63
Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142
| ||||| | ||| ||| | ||| | ||| | ||| ||||
Sbjct 62 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 23
>seq2686037
Length=194
Score = 84.2 bits (92), Expect = 8e-12
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
|| ||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 191 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 133
>seq2645378
Length=187
Score = 84.2 bits (92), Expect = 8e-12
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 27039 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 2 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 57
>seq1087588
Length=116
Score = 84.2 bits (92), Expect = 8e-12
Identities = 54/59 (92%), Gaps = 0/59 (0%)
Strand=Plus/Minus
Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
|| ||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 60 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 2
>seq221954
Length=357
Score = 84.2 bits (92), Expect = 8e-12
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 27039 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094
||||||||||||||||||||| |||||| ||||||||||||||| | |||||||||
Sbjct 356 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 301
>seq3056642
Length=1263
Score = 80.6 bits (88), Expect = 9e-11
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 24663 GCCATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCC 24722
|||||||| |||||||||||| | ||||||| || |||||||||||||||| |||
Sbjct 72 GCCATGCCTATCACCGAGCAGCAGTTGCTGCAGATACTCCCGAACGCCGGCCGCAATGCC 13
Query 24723 GGCGTTTTTGTT 24734
||||||||||||
Sbjct 12 GGCGTTTTTGTT 1
>seq1824633
Length=127
Score = 80.6 bits (88), Expect = 9e-11
Identities = 59/69 (86%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 24666 ATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 24725
||||| |||||||||||| | ||||||| ||||||||||||||||||| ||||||
Sbjct 32 ATGCCGATCACCGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCAATGCCGGC 91
Query 24726 GTTTTTGTT 24734
|||||||||
Sbjct 92 GTTTTTGTT 100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 173823711585816
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