Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq3088379 114 4e-21 seq3047186 113 2e-20 seq366846 113 2e-20 seq322084 107 7e-19 seq3023355 104 8e-18 seq303408 100 1e-16 seq3083733 95.1 4e-15 seq3087082 86.0 2e-12 seq2815396 86.0 2e-12 seq2686037 84.2 8e-12 seq2645378 84.2 8e-12 seq1087588 84.2 8e-12 seq221954 84.2 8e-12 seq3056642 80.6 9e-11 seq1824633 80.6 9e-11 >seq3088379 Length=10556 Score = 114 bits (126), Expect = 4e-21 Identities = 214/312 (69%), Gaps = 12/312 (4%) Strand=Plus/Plus Query 588 TCAAGTTCATGCAGCTCATGCCTCACACCAAAGGCAAATGGAGCGCTTCGAAGTCGAAGC 647 ||||| | |||||||| | || |||||||| ||| | ||| || | ||| ||| Sbjct 596 TCAAGCTGATGCAGCTTCTACCGCACACCAAGGGCGAGTGG---GCATTCAAGCGTCAGC 652 Query 648 TAGT---GTTCGAGCCTTGGCAGGTATTCATCGAGGCCAACATCTTCGGCTGGGTGAAGA 704 | | | |||||||||||||| | || | ||| | ||||||||||| |||| Sbjct 653 TGATCACGCTCGAGCCTTGGCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGGGTAAAGA 712 Query 705 GGGACACCGGCAAGCGCAGGTTCCGCGAGGCCTACGAAGAGATTCCCAGGAAGAACGGGA 764 | | ||| | ||| ||||||| || |||| || | ||||| || ||||| | Sbjct 713 AGAAGGGCGGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCA 772 Query 765 AGTCGGCCCGTCTTGCCGCACGAG---GCATTTACCTATTCGCCGCCGATGGCGAGTCGG 821 | |||| | |||||| | | |||| | | |||| |||||||||||||| | Sbjct 773 AATCGGT---TGTTGCCGGTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCG 829 Query 822 GGGCCGAGGTCTACTCCGGCGCCACCACCGAGAAGCAGGCCTTCGAGGTTTTCCGTCCGG 881 | |||||||| ||| | || || ||||| ||||| ||||||| ||||||||||| || | Sbjct 830 GCGCCGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTG 889 Query 882 CGTGGATGATGG 893 | | |||||| Sbjct 890 CCAAGCTGATGG 901 Score = 96.9 bits (106), Expect = 1e-15 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Plus Query 4872 GCGTCGACTGACCATCCGCGACCTGGTTGCGC---CTGGCACCACTGAGTCGAACTCCGT 4928 ||| || ||||||||||| |||||| | |||| | |||| ||| || || || | Sbjct 4481 GCGCCGGCTGACCATCCGTGACCTGCTGGCGCAAGGTCGCACGACT---TCCGACGCCAT 4537 Query 4929 CGAGTACGTCCGCGAGACCGGCTTCGTCAACAATGCCGCTCCTGTTTCGGAAGGCACCCA 4988 ||||||||| ||||||| || ||| |||||| |||||||| || | || ||||| | Sbjct 4538 CGAGTACGTGCGCGAGAACGTATTCATCAACAGCGCCGCTCCGGTCGCCGAGGGCACGCT 4597 Query 4989 GAAGCCATACTCCGACCTGACCTTC 5013 |||||| | ||| ||||||||||| Sbjct 4598 GAAGCCCGAGTCCAACCTGACCTTC 4622 >seq3047186 Length=1103 Score = 113 bits (124), Expect = 2e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | |||| | ||||||||||||| || Sbjct 717 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGCTCCCTGGAAC 776 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 ||||| | |||||||||||| | |||| | || || ||||| || |||||||| | Sbjct 777 AACGCCCCAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGG 836 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 |||| ||| | | ||||||||||||||||| || || ||| ||| | | || | | Sbjct 837 ACGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAAACGGAACACA 896 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142 ||||||| | ||| ||| | ||| | ||| | ||| |||| Sbjct 897 AGGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 936 >seq366846 Length=1509 Score = 113 bits (124), Expect = 2e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | |||| | |||||||||||| || Sbjct 479 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAAC 420 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 |||||| | |||||||||||| | |||| | || || ||||| || |||||||| | Sbjct 419 AACGCCCGAACAAGCGCCCGGTGAACTCCGACTTGCGTGAATCCGGAGCGATCGAGCAGG 360 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | ||||||||||||||||| || || ||| ||| | | || | | Sbjct 359 ATGCTGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAACACA 300 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGGAGAAATCGGC 49152 | ||||| | ||||||| | ||| | ||| | ||| ||||| ||| ||| Sbjct 299 AAGGCATTGCCGAAATCATCATCGGCAAGCAGCGGAACGGACCAATTGGC 250 >seq322084 Length=21621 Score = 107 bits (118), Expect = 7e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 24665 CATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGG 24724 |||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 12999 CATGCCGATCACCGAGCAGAAACTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 13058 Query 24725 CGTTTTTGTTGGTGCGC 24741 |||||||||| ||||| Sbjct 13059 CGTTTTTGTTTCTGCGC 13075 >seq3023355 Length=832 Score = 104 bits (114), Expect = 8e-18 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | |||| | |||||||||||| ||| Sbjct 597 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCCCAGCTCAACCGTTCCCTGGAGC 656 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || ||| | |||||||||||| | |||| | || || ||||| || |||||||| | Sbjct 657 AACGGCCGAACAAGCGCCCGGTGAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGG 716 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | ||||||||||||||||| || || ||| ||| | | || | | Sbjct 717 ATGCCGACGTGATCATGTTCGTGTACCGCGACGAGGTGTATCACCCCGAGACGGAGCACA 776 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142 | ||||| | ||| ||| | ||| | ||| | ||| |||| Sbjct 777 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 816 >seq303408 Length=1829 Score = 100 bits (110), Expect = 1e-16 Identities = 274/413 (66%), Gaps = 19/413 (5%) Strand=Plus/Minus Query 10169 CGAGTGCGCTACCGCGTTCAACCCCGGTGGCAACCCTGCCGACCAGATCGAAACCACATG 10228 |||| ||| ||| ||||| | || || || || ||||| ||||||||| ||| | Sbjct 1232 CGAGCACGCCACCTCGTTCGAACCGGGCGGTGCGCCGGCCGAACAGATCGAAGACACCAG 1173 Query 10229 CCTTA--GCGAAACTGTTCGGCGCTACCTGCGCGGCCTGCGCACGCCGGGACAGGCGTCG 10286 ||| | || || | || ||||| || |||||||| || || ||| Sbjct 1172 CCTGAATGCCGAAGAG--CGCAGCTACAAAAAGGGTCTGCGCACCCCAGGCACCGCGAGC 1115 Query 10287 CTGACCCTCAACGCTGACCCGCGCAACAGTTCCCATATCCGCCTCTACCAACTGTCCGAG 10346 ||| ||| ||||| ||||| |||| ||| |||||||| ||||||||||||| Sbjct 1114 CTGGGCCTGAACGCCGACCCTACCAACGCCAGCCACATCCGCCTGCACCAACTGTCCGAA 1055 Query 10347 TCCGACGACCAGATCGATCAGGACATCGCTTTCGCGGTTGGCTGGTCTGACGGTATTGGC 10406 || | | | | || | || | | || || |||||||| ||||| | | | Sbjct 1054 GCCAAGGGTGACACCGG-CGTGAAGTGG-----GCCGTGGGCTGGTCCGACGGCAAGGAC 1001 Query 10407 GTTGCACCAACCGAGGCACAGGACAGCAACGGTGATTGGGATTTCGTTCTTCCGCCGACG 10466 || || |||| || ||| ||| |||||| || ||| | || ||| |||| Sbjct 1000 GTACTGCCTACCGT----CA--ACACCAAAGGTGAT--GGCTTT-GAACTGCCGGCGACC 950 Query 10467 CGCACCTGGTTCGTCTTCCGCGGCTATGTGAGCGACTTCCCGTTCGATTTTGCAGCCAAC 10526 |||||||||||| ||| |||||| || |||||||||||| | || ||| ||| Sbjct 949 CGCACCTGGTTCACGTTCGACGGCTACGTCTCGGACTTCCCGTTCAACTTCGCACTGAAC 890 Query 10527 GCTGTGGTGACCTCTACCGCAACCATTCAGCGCTCCGGCGGTTCCGCCTGGAT 10579 || || |||||| | |||| ||||| || ||| ||||||| ||||||||| Sbjct 889 GCGGTCGTGACCACCACCGTGACCATCCAACGCACCGGCGGCAGCGCCTGGAT 837 >seq3083733 Length=2771 Score = 95.1 bits (104), Expect = 4e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 24665 CATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGG 24724 |||||| |||||||||||| | ||||||| ||||||||||||||||||| | |||||| Sbjct 2686 CATGCCGATCACCGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCCGG 2745 Query 24725 CGTTTTTGTTGGTGCGC 24741 |||||||||| ||||| Sbjct 2746 CGTTTTTGTTTCTGCGC 2762 >seq3087082 Length=4623 Score = 86.0 bits (94), Expect = 2e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 24663 GCCATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCC 24722 || ||||||||||| |||||| | ||||||| ||||||||||||||||||| | |||| Sbjct 3797 GCTATGCCCATCACTGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCCAAGCC 3856 Query 24723 GGCGTTTTTGTT 24734 |||||||| ||| Sbjct 3857 GGCGTTTTCGTT 3868 >seq2815396 Length=244 Score = 86.0 bits (94), Expect = 2e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 48923 TGGCCAGGGAGATCGGATGCCCGGTGCTCCCGCTCTGCCAGCTCAACCGCGGATGTGAGT 48982 |||||| ||| || ||||||||| | |||| | ||||||||||| || Sbjct 242 TGGCCAAGGAATTCAACTGCCCGGTGGTGGCGCTGTCGCAGCTCAACCGTTCCCTGGAAC 183 Query 48983 CTCGCCCGGATAAGCGCCCGGTGCTCAGCGACCTACGCGAGTCCGGCGCCATCGAGCAAG 49042 || || | |||||||||||| | |||||| ||||| ||||| || |||||||| | Sbjct 182 AGCGTCCCAACAAGCGCCCGGTGAACTCCGACCTGCGCGAATCCGGAGCGATCGAGCAGG 123 Query 49043 ACGCGGACATCGTGATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGATAAGA 49102 | || ||| | | ||||| |||||||| || || || || ||| | | || | | Sbjct 122 ATGCTGACGTGATCATGTTTGTGTACCGGGACGAGGTGTACCACCCCGAAACGGAACATA 63 Query 49103 AGGGCATCGGCGAAATCCTGATCCGGAAGAATCGGGACGG 49142 | ||||| | ||| ||| | ||| | ||| | ||| |||| Sbjct 62 AAGGCATTGCCGAGATCATCATCGGCAAGCAGCGGAACGG 23 >seq2686037 Length=194 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 191 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 133 >seq2645378 Length=187 Score = 84.2 bits (92), Expect = 8e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 27039 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 2 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 57 >seq1087588 Length=116 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27036 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 || ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 60 ACTGGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 2 >seq221954 Length=357 Score = 84.2 bits (92), Expect = 8e-12 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 27039 GGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27094 ||||||||||||||||||||| |||||| ||||||||||||||| | ||||||||| Sbjct 356 GGATTTAGGTTCCAGCGCCGCGAGGCGTAAGAGTTCGAGTCTCTTCATCCGCACCA 301 >seq3056642 Length=1263 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 24663 GCCATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCC 24722 |||||||| |||||||||||| | ||||||| || |||||||||||||||| ||| Sbjct 72 GCCATGCCTATCACCGAGCAGCAGTTGCTGCAGATACTCCCGAACGCCGGCCGCAATGCC 13 Query 24723 GGCGTTTTTGTT 24734 |||||||||||| Sbjct 12 GGCGTTTTTGTT 1 >seq1824633 Length=127 Score = 80.6 bits (88), Expect = 9e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 24666 ATGCCCATCACCGAGCAGAAACTGCTGCATATCCTCCCGAACGCCGGCCCTCGAGCCGGC 24725 ||||| |||||||||||| | ||||||| ||||||||||||||||||| |||||| Sbjct 32 ATGCCGATCACCGAGCAGCAGTTGCTGCAGATCCTCCCGAACGCCGGCCGCAATGCCGGC 91 Query 24726 GTTTTTGTT 24734 ||||||||| Sbjct 92 GTTTTTGTT 100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 173823711585816