Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq300236 89.7 3e-13 >seq300236 Length=7644 Score = 89.7 bits (98), Expect = 3e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| |||||||| ||||||||||| || || || | || Sbjct 7625 AGGACCAGGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAAAGGGTGCGCCCATCT 7566 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| ||| || || || || || | || ||||||||| || | || ||| || || Sbjct 7565 TCCAGCTGTTTCCCCGCAAAGATCAACCTCTGCTGGTCTGGAGGGATGCCCTCTTTTTCT 7506 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 |||||| ||| | || | || | || | | || || |||| ||||||||| Sbjct 7505 TGTATCTTCCCCTTGACATTCTCAATGGTGTCACTGGGCTCCACCTCCAGAGTGATGGTT 7446 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || ||||| || || |||||||||||||| Sbjct 7445 TTACCAGTGAGGGTCTTTACAAAGATCTGCAT 7414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310911173248160