Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_002642.1
Length=144575
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 176 4e-39
seq332822 107 2e-18
seq85459 105 6e-18
seq2658871 89.7 5e-13
>seq28392
Length=738
Score = 176 bits (194), Expect = 4e-39
Identities = 284/403 (70%), Gaps = 14/403 (3%)
Strand=Plus/Plus
Query 15971 AAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAA 16030
||||| || || || || || | |||||||||||||||||| ||||| ||||||| | |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCT--A 58
Query 16031 CAATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087
| | | | | || | |||| |||| || | |||||| ||||| || || ||
Sbjct 59 CTCT-GCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATG 117
Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147
||||| ||||| ||| || ||||| || || | || ||||| | || || || |
Sbjct 118 TACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGG 177
Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGA 16207
|| | | |||||| |||| || | | |||||| ||| ||||| | || || | ||
Sbjct 178 AACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACT-CTCTGTT---CCGA 233
Query 16208 GGGTTT----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTC 16263
||||| || | |||||| ||||| | || ||||| ||||| ||||| || || ||
Sbjct 234 AGGTTTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATC 293
Query 16264 CCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCA 16323
|| || || | || | ||||| || || || ||||| ||||||||||| || | |||
Sbjct 294 TCTGCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA 353
Query 16324 AAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACT 16366
||||| | ||||| ||||| |||||||| || ||||| |||
Sbjct 354 GAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq332822
Length=31618
Score = 107 bits (118), Expect = 2e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944
|||||||||| ||||| | || ||||||||| | | | || |||||||| |
Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 5212
Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004
||||| || ||||| || ||||||||||||||||| || ||||| ||||| ||||
Sbjct 5211 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 5152
Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028
||||||||||||| ||||||| ||
Sbjct 5151 CCATAAAATCAAAGGGATTTTCTG 5128
>seq85459
Length=10496
Score = 105 bits (116), Expect = 6e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336
|| || ||||| || ||||| ||||||||||||||||| || | ||| ||||| | |||
Sbjct 8936 TCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 8877
Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCA 16382
|| ||||| |||||||| || ||||| ||||||||||| || ||||
Sbjct 8876 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCA 8831
Score = 91.5 bits (100), Expect = 1e-13
Identities = 89/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547
|||||||| |||| ||| |||||||| || || | |||||||||||| ||||| || |
Sbjct 6870 TTTCTTTGGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 6811
Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602
| ||||| || || || || ||||| || |||| ||||||| || || |||||
Sbjct 6810 TTTCCATGGCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756
>seq2658871
Length=189
Score = 89.7 bits (98), Expect = 5e-13
Identities = 79/99 (80%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986
||||||| ||| ||| | ||||| || | |||||||| |||||||| || || || |
Sbjct 83 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 142
Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025
| || | |||||||||||||||||| ||||| |||||||
Sbjct 143 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 444656082504600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |