Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq28392 176 4e-39 seq332822 107 2e-18 seq85459 105 6e-18 seq2658871 89.7 5e-13 >seq28392 Length=738 Score = 176 bits (194), Expect = 4e-39 Identities = 284/403 (70%), Gaps = 14/403 (3%) Strand=Plus/Plus Query 15971 AAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAA 16030 ||||| || || || || || | |||||||||||||||||| ||||| ||||||| | | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCT--A 58 Query 16031 CAATAGTATTTATCGC---ATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATA 16087 | | | | | || | |||| |||| || | |||||| ||||| || || || Sbjct 59 CTCT-GCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATG 117 Query 16088 TACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAA 16147 ||||| ||||| ||| || ||||| || || | || ||||| | || || || | Sbjct 118 TACTGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGG 177 Query 16148 AAAtttttttCTATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGA 16207 || | | |||||| |||| || | | |||||| ||| ||||| | || || | || Sbjct 178 AACTCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACT-CTCTGTT---CCGA 233 Query 16208 GGGTTT----AATAAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTC 16263 ||||| || | |||||| ||||| | || ||||| ||||| ||||| || || || Sbjct 234 AGGTTTGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATC 293 Query 16264 CCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCA 16323 || || || | || | ||||| || || || ||||| ||||||||||| || | ||| Sbjct 294 TCTGCTAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCA 353 Query 16324 AAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACT 16366 ||||| | ||||| ||||| |||||||| || ||||| ||| Sbjct 354 GAATATCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq332822 Length=31618 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||||| | || ||||||||| | | | || |||||||| | Sbjct 5271 TTTAAAAATCTGCATCTAAGGTGAAGACATTATCTGTAGTTTCTGCCATAACTGCAAAAC 5212 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || ||||||||||||||||| || ||||| ||||| |||| Sbjct 5211 GCTGATACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTCCCCTCTAAGGAAATGTTTT 5152 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||| ||||||| || Sbjct 5151 CCATAAAATCAAAGGGATTTTCTG 5128 >seq85459 Length=10496 Score = 105 bits (116), Expect = 6e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 || || ||||| || ||||| ||||||||||||||||| || | ||| ||||| | ||| Sbjct 8936 TCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 8877 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCA 16382 || ||||| |||||||| || ||||| ||||||||||| || |||| Sbjct 8876 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCA 8831 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 16488 TTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 |||||||| |||| ||| |||||||| || || | |||||||||||| ||||| || | Sbjct 6870 TTTCTTTGGAATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGT 6811 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC 16602 | ||||| || || || || ||||| || |||| ||||||| || || ||||| Sbjct 6810 TTTCCATGGCAATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTC 6756 >seq2658871 Length=189 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 15927 TTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTC 15986 ||||||| ||| ||| | ||||| || | |||||||| |||||||| || || || | Sbjct 83 TTGACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCC 142 Query 15987 CTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 | || | |||||||||||||||||| ||||| ||||||| Sbjct 143 CCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTT 181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444656082504600