Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_002665.1
Length=108873
Score E
Sequences producing significant alignments: (Bits) Value
seq107656 2435 0.0
seq291908 136 3e-27
seq307137 114 9e-21
>seq107656
Length=18857
Score = 2435 bits (2700), Expect = 0.0
Identities = 1564/1711 (91%), Gaps = 33/1711 (2%)
Strand=Plus/Plus
Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130
||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| |||||
Sbjct 3840 GTCCTAACTCCAGGCCCAGCATGATCAGCTGGTTTGTAGCGTCAGGTTACAGATCTCCAT 3899
Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190
||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 3900 CCACAAGGGTCCCAGGCAGGACTTGACTGAGGATATTTGTCTAGAGAAGAAATCTATCTT 3959
Query 107191 TACCATCACTCTGGAGTTG-AACTTGATGTTCTG-------------GATTAGTTTGTAA 107236
| ||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 3960 TGCCATCACTCTGGAGTTGGAACTTAATGTTCTTTGAGGATGTTCCAGATTAGTTTGTAA 4019
Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCT 107296
|||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||
Sbjct 4020 CTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCTGCCTTCCCTGTGCTCAAACTCT 4079
Query 107297 CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCA 107356
| ||||| ||||||||||||||| ||||||||||||||||||| |||||||| |||||
Sbjct 4080 ACCAATCTCTCATCCCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCA 4139
Query 107357 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAG 107416
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 4140 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTCTCAG 4199
Query 107417 GTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTG 107476
||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||| ||
Sbjct 4200 GTTGAAATGTGATGTAGACTCCTTGGATCTGGAGTCCAGGGGCTTCCAAAGTCAGCATTG 4259
Query 107477 TAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGG 107536
||| || | || ||||| | ||||||||||||||| ||||| |||||||||||||||||
Sbjct 4260 TAGAGATGTCTTATACAAGAACCTGAAGCTGCCAGCGAAGAGCTCCATCAACTGTTCTGG 4319
Query 107537 GATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAA 107596
|||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||| ||
Sbjct 4320 GATCACACGAGGGGACCAGGAAGCAGTGAGCCAGGCTCTCCTGGACAACCTGGAAGTCAA 4379
Query 107597 GAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG 107656
||| ||||||| |||| |||||| |||| ||||||||||||| |||||||||||||||||
Sbjct 4380 GAAGAAGCGGTTGCCTTTCACTGACACCGATTACCTCAACATGACCAGAGACTGTGAGCG 4439
Query 107657 CTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCC 107716
|| ||||||| ||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 4440 GTTTAAGGCCCGAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTCAGACTTCCC 4499
Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4500 CATTGCATACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 4559
Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836
|||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 4560 TGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTT 4619
Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 4620 CAAAGAGGCAGTCAAGGCCATTATTTCCTGTTTCCCCAATGTCTTCATGGCCAGTAAGTT 4679
Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 4680 GGTCCCAGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGA 4739
Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 4740 CTTGCTCCAGAGCTCAGTGCCATGGAAATACTTACTGAATACATGCGGGACAGACTTCCC 4799
Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 4800 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTAT 4859
Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC 108136
|||||||||| |||||||||||| |||||||| |||||||||||||||||| |||||||
Sbjct 4860 GGAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACAAGGTGAC 4919
Query 108137 AGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTT 108196
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 4920 AGACAGACTGTACCTAACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTT 4979
Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 4980 CACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCC 5039
Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316
||||||||||||||| ||||||||| |||||||||||||||||| || |||||||||||
Sbjct 5040 CAAATCCCAAAGACTGATTGAATGGGCCAAAGACACCTATAGCCCTGATGAACACCTCTG 5099
Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 5100 GGCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCA 5159
Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436
|||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||
Sbjct 5160 CATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAGATGT 5219
Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496
|||||||||||| ||||||||||| |||||||||||||||| | ||||||| ||||||||
Sbjct 5220 CAGCATGGGGGCACCTTATGCACCTTGCTCTGGAATCCATCAGCGGGCCATTTGCATTTA 5279
Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 5280 TGGGGCCGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 5339
Query 108557 CCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCAT 108616
||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 5340 CCCAAGGGTGGATGATAACGTCCTGCAGTGCTTGGAAGAGTATTTACGTCATAAGGCCAT 5399
Query 108617 CTATGGGACTGAACTTTGAGCTGCACTGT------------------GGGCCAGGGAC-T 108657
||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 5400 CTATGGGACTGAACTTTGAGCTGTACTGTGGGCGGATTGCTACCCGAGGGCCAGGGACAT 5459
Query 108658 GTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 108717
||||||||| ||| ||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 5460 GTGCCAACACGCCTAGGGCATGCTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 5519
Query 108718 CCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748
|||||||||||||||||||||||| |||||
Sbjct 5520 TCATGGCATCCCCCAGGGTCAGAGGCCTGCT 5550
>seq291908
Length=12262
Score = 136 bits (150), Expect = 3e-27
Identities = 576/890 (65%), Gaps = 31/890 (3%)
Strand=Plus/Plus
Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747
||||| |||||||||||| || || || || || || || || ||||| ||| | ||
Sbjct 721 CCACTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 780
Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807
||||||| |||| |||| ||| | ||| | || |||||||| | || ||| |
Sbjct 781 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATT 840
Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867
|||||||| || || || | || | || | || ||| ||||||
Sbjct 841 CACGTGGACACAAAATCAGAGGAATCATTTTTGGCTGCAGCTGTGGGCATGGCATCCTGC 900
Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927
||| |||||||| | |||||| || ||| ||||| ||||| |||||| | |
Sbjct 901 TTCAGTAATGTCTTTGTCGCCAGTCAGCTGGAGAATGTGGTGTATGCATCCTGGAGCCGG 960
Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985
|| || ||||| || ||||| ||| | ||| | |||||| | | | ||| |||||||
Sbjct 961 GTTCAGGCTGATCTTAACTGCATGCAGGACCT-CTCCAG-GATGAATGCAGACTGGAAGT 1018
Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045
|| | | ||| ||||| | || || || || || ||||| ||||| ||| |
Sbjct 1019 ACCTGATAAATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAGATTGTCAGGA 1078
Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102
|||||| |||||| |||| |||||| | || | ||| | || || | |
Sbjct 1079 AGCTCAAGTTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCAT---A 1135
Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT---GACAGACACACTGTACCCTACCA--G 108157
||||| | | |||||| | | ||||| || || | | ||| ||| | || |
Sbjct 1136 AAAAAGAAAGGTGGAAAAAGCATTATGAAGTCGTGAATGGAAAGCTG-ACC--AACATGG 1192
Query 108158 CAA--GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215
|| || || || ||| ||| | | ||| |||| |||| | ||||||||||
Sbjct 1193 GAACTGACAAAATACA-TCCACCTCTTGAAACACCTCTGTTTTCAGGAAGTGCCTATTTT 1251
Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGT 108274
|||| | | | | | ||| | | || | | |||| || |||| |||| | |
Sbjct 1252 GTGGTCAGTAGGGAGTATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTA-T 1310
Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334
|| |||| ||||||||| || ||||| ||||| | ||||||||||| ||||| | |
Sbjct 1311 GGAGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAG-GA 1369
Query 108335 TCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGA 108390
||| | | | || || || | |||| ||||| ||||| ||| || ||||||
Sbjct 1370 TCCCCGAAGTCCCAGGGTCACTGTCCTTGAGCCA---TAAGTACGACACGTCTGACATGC 1426
Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450
|| || |||||| | || || ||||||||| || ||||| || || ||| || |
Sbjct 1427 AGGCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCC 1486
Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510
| || | || ||| || |||| | | || | ||| ||| ||| || || |||
Sbjct 1487 CCTACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACT 1546
Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560
|| ||||| | || | || ||| | || || ||||| || ||||||
Sbjct 1547 TGAACTGGCTGCTGCGCGTGCACCACTTGTTTGCCAACAAATTCGACCCG 1596
>seq307137
Length=29533
Score = 114 bits (126), Expect = 9e-21
Identities = 93/113 (82%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810
|| || ||||||||| ||| ||||||||| | | |||||||||| || |||| |||
Sbjct 14692 GACGGTGTCAGGATGCTGGTTCCAGGAGATGTCCGTTCACCCATTTCATCAGGAGTTCCG 14633
Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863
| |||||| |||||||||| ||||| |||||| ||||||| ||||||||||||
Sbjct 14632 CGTATGAGTGTGTTGGGTATGGTGACGTTTGGCCCCGAATCAACTTCTCTAAC 14580
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 335159534759214
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