Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq107656 2435 0.0 seq291908 136 3e-27 seq307137 114 9e-21 >seq107656 Length=18857 Score = 2435 bits (2700), Expect = 0.0 Identities = 1564/1711 (91%), Gaps = 33/1711 (2%) Strand=Plus/Plus Query 107071 GTCCTAACTCCAGTCCCAGCATGACTAGCTGGTTTGCAGCATCAGGTTACAGATGTCCAT 107130 ||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||| Sbjct 3840 GTCCTAACTCCAGGCCCAGCATGATCAGCTGGTTTGTAGCGTCAGGTTACAGATCTCCAT 3899 Query 107131 CCACAAGGGTCTTAGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTT 107190 ||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 3900 CCACAAGGGTCCCAGGCAGGACTTGACTGAGGATATTTGTCTAGAGAAGAAATCTATCTT 3959 Query 107191 TACCATCACTCTGGAGTTG-AACTTGATGTTCTG-------------GATTAGTTTGTAA 107236 | ||||||||||||||||| ||||| ||||||| ||||||||||||| Sbjct 3960 TGCCATCACTCTGGAGTTGGAACTTAATGTTCTTTGAGGATGTTCCAGATTAGTTTGTAA 4019 Query 107237 TTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCCACCTTGCCTGTGCCCAAACTCT 107296 |||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| Sbjct 4020 CTAAAGGCATTTTGTTCTGTCCAAGGATCTCCTCCTCTGCCTTCCCTGTGCTCAAACTCT 4079 Query 107297 CCTGATCTCCCATCCCATGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCA 107356 | ||||| ||||||||||||||| ||||||||||||||||||| |||||||| ||||| Sbjct 4080 ACCAATCTCTCATCCCATGAAGATGACTGGGTGGAAGAAGAAGCTCTGCCGGGGGCATCA 4139 Query 107357 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAG 107416 |||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| Sbjct 4140 TCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGTTGCTCTGAGGCTTTCTCTCAG 4199 Query 107417 GTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTG 107476 ||| |||||||||||||| |||||||||||||||||||||| |||||| |||||||| || Sbjct 4200 GTTGAAATGTGATGTAGACTCCTTGGATCTGGAGTCCAGGGGCTTCCAAAGTCAGCATTG 4259 Query 107477 TAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGG 107536 ||| || | || ||||| | ||||||||||||||| ||||| ||||||||||||||||| Sbjct 4260 TAGAGATGTCTTATACAAGAACCTGAAGCTGCCAGCGAAGAGCTCCATCAACTGTTCTGG 4319 Query 107537 GATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAA 107596 |||||| ||||||||||||||||||||| |||||| ||||| |||||||||||||| || Sbjct 4320 GATCACACGAGGGGACCAGGAAGCAGTGAGCCAGGCTCTCCTGGACAACCTGGAAGTCAA 4379 Query 107597 GAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCG 107656 ||| ||||||| |||| |||||| |||| ||||||||||||| ||||||||||||||||| Sbjct 4380 GAAGAAGCGGTTGCCTTTCACTGACACCGATTACCTCAACATGACCAGAGACTGTGAGCG 4439 Query 107657 CTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCC 107716 || ||||||| ||||||||||||||||||||||||||| ||||||||| ||||||||| Sbjct 4440 GTTTAAGGCCCGAAGGAAGTTCATACAGTTCCCACTGAGCAAAGAAGAGTCAGACTTCCC 4499 Query 107717 CATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 107776 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4500 CATTGCATACTCGATGGTGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGC 4559 Query 107777 CGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTT 107836 |||||||||||||||||||||||||||||||| ||||||| |||||||||||| ||||| Sbjct 4560 TGTGTATGCCCCTCAGAACATATACTGTGTCCATGTGGATGAGAAGTCCCCAGAAACTTT 4619 Query 107837 CAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTT 107896 ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 4620 CAAAGAGGCAGTCAAGGCCATTATTTCCTGTTTCCCCAATGTCTTCATGGCCAGTAAGTT 4679 Query 107897 GGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGA 107956 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 4680 GGTCCCAGTGGTTTATGCCTCCTGGTCCAGAGTGCAGGCTGACCTGAACTGTATGGAAGA 4739 Query 107957 CTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCC 108016 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4740 CTTGCTCCAGAGCTCAGTGCCATGGAAATACTTACTGAATACATGCGGGACAGACTTCCC 4799 Query 108017 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTAT 108076 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 4800 CATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGATGTTGAATGGGAAGAACAGTAT 4859 Query 108077 GGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAGGTGAC 108136 |||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||| Sbjct 4860 GGAGTCTGAGATACCTTCTGAGTACAAAAAAACTCGCTGGAAATACCGCTACAAGGTGAC 4919 Query 108137 AGACACACTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTT 108196 ||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 4920 AGACAGACTGTACCTAACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCTATGTT 4979 Query 108197 CACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCC 108256 |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 4980 CACAGGGAATGCCTATTTTGTGGCTTCTCGAGCCTTTGTCCAACATGTCTTAGAGAACCC 5039 Query 108257 TAAATCCCAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTG 108316 ||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||| Sbjct 5040 CAAATCCCAAAGACTGATTGAATGGGCCAAAGACACCTATAGCCCTGATGAACACCTCTG 5099 Query 108317 GGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCA 108376 |||||||||||||||||| || |||||||||||||||||||| ||||||||||||||| Sbjct 5100 GGCCACCCTTCAGCGTGCACCATGGATGCCTGGCTCTGTTCCCTACCACCCCAAGTATCA 5159 Query 108377 CATCTCAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGT 108436 |||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| Sbjct 5160 CATCTCAGACATGACTGCCATCGCCAGGCTGGTCAAGTGGCAGGACCATGAGGGAGATGT 5219 Query 108437 CAGCATGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTA 108496 |||||||||||| ||||||||||| |||||||||||||||| | ||||||| |||||||| Sbjct 5220 CAGCATGGGGGCACCTTATGCACCTTGCTCTGGAATCCATCAGCGGGCCATTTGCATTTA 5279 Query 108497 CGGGGCCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5280 TGGGGCCGGGGACCTGCACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 5339 Query 108557 CCCGAGGGTGGATGATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCAT 108616 ||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||||| Sbjct 5340 CCCAAGGGTGGATGATAACGTCCTGCAGTGCTTGGAAGAGTATTTACGTCATAAGGCCAT 5399 Query 108617 CTATGGGACTGAACTTTGAGCTGCACTGT------------------GGGCCAGGGAC-T 108657 ||||||||||||||||||||||| ||||| ||||||||||| | Sbjct 5400 CTATGGGACTGAACTTTGAGCTGTACTGTGGGCGGATTGCTACCCGAGGGCCAGGGACAT 5459 Query 108658 GTGCCAACATGCCCAGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 108717 ||||||||| ||| ||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 5460 GTGCCAACACGCCTAGGGCATGCTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAAT 5519 Query 108718 CCATGGCATCCCCCAGGGTCAGAGGGCTGCT 108748 |||||||||||||||||||||||| ||||| Sbjct 5520 TCATGGCATCCCCCAGGGTCAGAGGCCTGCT 5550 >seq291908 Length=12262 Score = 136 bits (150), Expect = 3e-27 Identities = 576/890 (65%), Gaps = 31/890 (3%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 ||||| |||||||||||| || || || || || || || || ||||| ||| | || Sbjct 721 CCACTTAGTAAAGAAGAGGCGGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAA 780 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | || |||||||| | || ||| | Sbjct 781 ATTGAAATGCTTGACAGGCTCCTGAGGGCCATCTACATGCCTCAGAATTTCTATTGTATT 840 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || || || | || | || | || ||| |||||| Sbjct 841 CACGTGGACACAAAATCAGAGGAATCATTTTTGGCTGCAGCTGTGGGCATGGCATCCTGC 900 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 ||| |||||||| | |||||| || ||| ||||| ||||| |||||| | | Sbjct 901 TTCAGTAATGTCTTTGTCGCCAGTCAGCTGGAGAATGTGGTGTATGCATCCTGGAGCCGG 960 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || ||||| || ||||| ||| | ||| | |||||| | | | ||| ||||||| Sbjct 961 GTTCAGGCTGATCTTAACTGCATGCAGGACCT-CTCCAG-GATGAATGCAGACTGGAAGT 1018 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGG 108045 || | | ||| ||||| | || || || || || ||||| ||||| ||| | Sbjct 1019 ACCTGATAAATCTCTGCGGAATGGATTTTCCTATTAAAACCAACCTGGAGATTGTCAGGA 1078 Query 108046 CCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTA---CCTTCTGAGTCCa 108102 |||||| |||||| |||| |||||| | || | ||| | || || | | Sbjct 1079 AGCTCAAGTTGTTGATGGGTGAGAACAACCTAGAAACGGAGAGAATGCCATCCCAT---A 1135 Query 108103 aaaaaaaTCGCTGGAAATACCGCTATGAGGT---GACAGACACACTGTACCCTACCA--G 108157 ||||| | | |||||| | | ||||| || || | | ||| ||| | || | Sbjct 1136 AAAAAGAAAGGTGGAAAAAGCATTATGAAGTCGTGAATGGAAAGCTG-ACC--AACATGG 1192 Query 108158 CAA--GATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTT 108215 || || || || ||| ||| | | ||| |||| |||| | |||||||||| Sbjct 1193 GAACTGACAAAATACA-TCCACCTCTTGAAACACCTCTGTTTTCAGGAAGTGCCTATTTT 1251 Query 108216 GTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAA-ATCCCAAAGACTGGT 108274 |||| | | | | | ||| | | || | | |||| || |||| |||| | | Sbjct 1252 GTGGTCAGTAGGGAGTATGTGGAGTACGTGCTCCAGAACCAAAATATCCAAAAGTTTA-T 1310 Query 108275 TGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGC 108334 || |||| ||||||||| || ||||| ||||| | ||||||||||| ||||| | | Sbjct 1311 GGAGTGGGCCAAAGACACATACAGCCCTGACGAGTATCTCTGGGCCACTATTCAGAG-GA 1369 Query 108335 TCCGTGGA-TGCCTGGCTCTGT-TCCT--AGCCACCCCAAGTATCACATCTCAGACATGA 108390 ||| | | | || || || | |||| ||||| ||||| ||| || |||||| Sbjct 1370 TCCCCGAAGTCCCAGGGTCACTGTCCTTGAGCCA---TAAGTACGACACGTCTGACATGC 1426 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || || |||||| | || || ||||||||| || ||||| || || ||| || | Sbjct 1427 AGGCGATTGCCAGGTTTGTTAAATGGCAGTACTTTGAAGGAGACGTTTCCAAGGGCGCCC 1486 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 | || | || ||| || |||| | | || | ||| ||| ||| || || ||| Sbjct 1487 CCTACCCGCCGTGCGGCGGCGTCCACGTGCGCTCCGTGTGCGTTTTCGGAGCTGGTGACT 1546 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCG 108560 || ||||| | || | || ||| | || || ||||| || |||||| Sbjct 1547 TGAACTGGCTGCTGCGCGTGCACCACTTGTTTGCCAACAAATTCGACCCG 1596 >seq307137 Length=29533 Score = 114 bits (126), Expect = 9e-21 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 108751 GATGGGGTCAGGATGTTGGCTCCAGGAGAGGCCTGTTCACCCATGTCTCTTGGAGCTCCA 108810 || || ||||||||| ||| ||||||||| | | |||||||||| || |||| ||| Sbjct 14692 GACGGTGTCAGGATGCTGGTTCCAGGAGATGTCCGTTCACCCATTTCATCAGGAGTTCCG 14633 Query 108811 CATATGAGAGTGTTGGGTAGGGTGATGTTTGGTCCCGAATTAACTTCTCTAAC 108863 | |||||| |||||||||| ||||| |||||| ||||||| |||||||||||| Sbjct 14632 CGTATGAGTGTGTTGGGTATGGTGACGTTTGGCCCCGAATCAACTTCTCTAAC 14580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335159534759214