Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_002703.1 Length=38347 Score E Sequences producing significant alignments: (Bits) Value seq327277 89.7 1e-13 >seq327277 Length=624 Score = 89.7 bits (98), Expect = 1e-13 Identities = 124/173 (72%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 3388 AGTACGGGTTTACAGAGAACGTTGATTTTATAGGTTTTACTGAAAAAAGAGTAAAACCT- 3446 |||| || ||| ||| ||| || ||| | |||||| | || ||||||| | Sbjct 176 AGTATGGTTTTTTAGAAAACAAAGACTTTGTGAGTTTTATTCAAGTTTTAGTAAAATCAA 117 Query 3447 --CAAGGCGGTCGTCCAAGCGTTGACCATGCTCTTAAACTTGACATGGCAAAAGAAATTT 3504 ||| || || ||||||| | || || |||| | ||||||||||||||| || Sbjct 116 AACAAAACGCTCATCCAAGCATGGAATATTACCTTACTTTAGACATGGCAAAAGAACTTG 57 Query 3505 CCATGATTCAGCGTAACGAAAAAGGGAAACAAGCCCGTCAATATTTCATTGAA 3557 | |||||| |||| || ||||| || || ||||| |||||||||||||||||| Sbjct 56 CTATGATTGAGCGCAATGAAAAGGGAAAGCAAGCACGTCAATATTTCATTGAA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118092724819838