Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 127 2e-24
seq2658871 96.9 3e-15
seq141641 95.1 1e-14
seq85459 93.3 4e-14
seq2306809 82.4 7e-11
>seq28392
Length=738
Score = 127 bits (140), Expect = 2e-24
Identities = 269/398 (68%), Gaps = 4/398 (1%)
Strand=Plus/Plus
Query 13940 AAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGAC 13999
||||||||||| || || |||||||| |||||||||||||| |||||||||||| |
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 14000 ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059
| | || || | | || || || | | | |||||| || | |||||| || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119
|| ||| ||| || ||||| || || || || ||||| | | || | ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 14120 TCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTA--GAAGGAG 14177
|| | |||||| || || | | || || || | || | || | |||||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATT-TCTTT-TACTCTCTGTTCCGAAGGTT 238
Query 14178 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 14237
| || ||||| || || | || ||||| ||||| || | ||||||||||| |
Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298
Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297
|||||||||| | ||||| || | || ||||||| ||||||||| || | ||| ||||
Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358
Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335
| | || || || ||||||||||| || || || |||
Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq2658871
Length=189
Score = 96.9 bits (106), Expect = 3e-15
Identities = 79/96 (82%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957
|| || || ||||| | ||||| || | ||||| || |||||||||||||| || ||
Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144
Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993
|||||||| |||||||||||||| ||||||||||||
Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180
>seq141641
Length=332
Score = 95.1 bits (104), Expect = 1e-14
Identities = 163/232 (70%), Gaps = 6/232 (3%)
Strand=Plus/Minus
Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648
||||||||||||| ||||| |||||||| |||||||| || |||| | | |||||
Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273
Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTAC 14706
| | | ||| ||| | || || ||| | ||| || ||||| ||||| || ||
Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGGAAAGGTCCAC 215
Query 14707 TTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATA 14766
|| ||| |||||||||| ||| ||||||| |||||||| ||| || || | ||
Sbjct 214 CTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTA 155
Query 14767 TAATATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAGAATTGGTTC 14817
| |||||||| | ||||| | | ||| ||||| | |||| ||||||
Sbjct 154 TTTAATAGGAAAGATGACAAAGCGGCGGGGAT-TTTCTCTCAGAAGTGGTTC 104
>seq85459
Length=10496
Score = 93.3 bits (102), Expect = 4e-14
Identities = 71/84 (85%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532
|||||| ||||||||||| | |||||||||||||| |||||||||||||| || || ||
Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795
Query 14533 AAAACCATAAAAACATCTAGCTTC 14556
|| ||||| ||||||| |||||
Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771
Score = 91.5 bits (100), Expect = 1e-13
Identities = 94/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298
||||||||| || ||||| || | || ||||| | ||||||||| || | ||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358
| || || || ||||||||||| || || || ||||| ||||| |||| | |||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824
Query 14359 TCC 14361
|||
Sbjct 8823 TCC 8821
>seq2306809
Length=138
Score = 82.4 bits (90), Expect = 7e-11
Identities = 90/120 (75%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573
|||||||||| || || || || ||||| ||||| | ||||| | || || |||
Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60
Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633
| |||| | || ||||||||||||| ||||| |||||||| |||||||| || ||||
Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 463723978857480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |