Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq28392 127 2e-24 seq2658871 96.9 3e-15 seq141641 95.1 1e-14 seq85459 93.3 4e-14 seq2306809 82.4 7e-11 >seq28392 Length=738 Score = 127 bits (140), Expect = 2e-24 Identities = 269/398 (68%), Gaps = 4/398 (1%) Strand=Plus/Plus Query 13940 AAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTGTTGAC 13999 ||||||||||| || || |||||||| |||||||||||||| |||||||||||| | Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60 Query 14000 ATAAACACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATAT 14059 | | || || | | || || || | | | |||||| || | |||||| || || Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120 Query 14060 TGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAAT 14119 || ||| ||| || ||||| || || || || ||||| | | || | || Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180 Query 14120 TCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATTA--GAAGGAG 14177 || | |||||| || || | | || || || | || | || | ||||| Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATT-TCTTT-TACTCTCTGTTCCGAAGGTT 238 Query 14178 GATATTTTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTAC 14237 | || ||||| || || | || ||||| ||||| || | ||||||||||| | Sbjct 239 TGTGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGC 298 Query 14238 TAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATA 14297 |||||||||| | ||||| || | || ||||||| ||||||||| || | ||| |||| Sbjct 299 TAATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATA 358 Query 14298 TTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACT 14335 | | || || || ||||||||||| || || || ||| Sbjct 359 TCGACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396 >seq2658871 Length=189 Score = 96.9 bits (106), Expect = 3e-15 Identities = 79/96 (82%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 13898 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13957 || || || ||||| | ||||| || | ||||| || |||||||||||||| || || Sbjct 85 GACATCACTCCCATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCC 144 Query 13958 TCCAGTGATATATTTTCCATAAAATCAAATGGATTT 13993 |||||||| |||||||||||||| |||||||||||| Sbjct 145 TCCAGTGAAATATTTTCCATAAAGTCAAATGGATTT 180 >seq141641 Length=332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 14589 CCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAA 14648 ||||||||||||| ||||| |||||||| |||||||| || |||| | | ||||| Sbjct 332 CCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAA 273 Query 14649 AGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTAC 14706 | | | ||| ||| | || || ||| | ||| || ||||| ||||| || || Sbjct 272 AATCTCTCTCCTCAGGCTTCAGGGCTTCCCAGT--GCTGAATGTCCTTGGAAAGGTCCAC 215 Query 14707 TTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTATACATTACCCATATTTCTTTATA 14766 || ||| |||||||||| ||| ||||||| |||||||| ||| || || | || Sbjct 214 CTCCTCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTA 155 Query 14767 TAATATAGGAAAAACTACAAATC-TTGAAGATGTTTCTTTAAGAATTGGTTC 14817 | |||||||| | ||||| | | ||| ||||| | |||| |||||| Sbjct 154 TTTAATAGGAAAGATGACAAAGCGGCGGGGAT-TTTCTCTCAGAAGTGGTTC 104 >seq85459 Length=10496 Score = 93.3 bits (102), Expect = 4e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 14473 AATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTG 14532 |||||| ||||||||||| | |||||||||||||| |||||||||||||| || || || Sbjct 6854 AATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 6795 Query 14533 AAAACCATAAAAACATCTAGCTTC 14556 || ||||| ||||||| ||||| Sbjct 6794 GAAGCCATAGAAACATCGGGCTTC 6771 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 14239 AATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATAT 14298 ||||||||| || ||||| || | || ||||| | ||||||||| || | ||| ||||| Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884 Query 14299 TGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTC 14358 | || || || ||||||||||| || || || ||||| ||||| |||| | ||||| Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACCACACGTTC 8824 Query 14359 TCC 14361 ||| Sbjct 8823 TCC 8821 >seq2306809 Length=138 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 14514 TGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCTG 14573 |||||||||| || || || || ||||| ||||| | ||||| | || || ||| Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60 Query 14574 AGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 | |||| | || ||||||||||||| ||||| |||||||| |||||||| || |||| Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463723978857480