Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq20229 111 1e-19
seq155098 95.1 1e-14
>seq20229
Length=11930
Score = 111 bits (122), Expect = 1e-19
Identities = 114/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107
||||| |||||| || ||||| || ||||| || || || ||||| || || || ||
Sbjct 4826 ACCTCATCTTTGCTGGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTT 4885
Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167
||||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||
Sbjct 4886 CCCAAGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTA 4945
Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196
|| ||||| ||| ||||| ||||| ||
Sbjct 4946 CCTGTCTCTGTCTGAGACTCAATGATGGC 4974
>seq155098
Length=7669
Score = 95.1 bits (104), Expect = 1e-14
Identities = 158/223 (71%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249
|| ||||| ||||| || ||||| ||||| || || || ||||| |||| || |||||
Sbjct 7440 AAGATGCAGATTTTTGTGAAGACCCTGACGGGGAAGACCATCACTCTCGAGGTCGAACCC 7381
Query 31250 TCCGACAGTGTCGAAACGGTCAA-ACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308
|| || | | |||| || || || ||| | ||| |||||||| | || || ||
Sbjct 7380 TCGGATACAATAGAAAATGTAAAGACCAAGA-TCCAGGATAAGGAAGGAATTCCTCCTGA 7322
Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATT 31367
|||||| || || || |||||||| || ||||||| | | | ||| || || |
Sbjct 7321 CCAGCAAATACTGATCTTTGCTGGCAAGCAACTGGAAGA-TGAACGTACTTTGTCTGACT 7263
Query 31368 ATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410
| | ||||||||| || || ||||||||||| || | |||||
Sbjct 7262 ACAGCATTCAAAAGGAGTCCACTCTTCATCTAGTGTTGAGACT 7220
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 428990284934513
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |