Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq28392 174 2e-38
seq58757 131 2e-25
seq2306809 114 2e-20
seq85459 111 2e-19
seq378375 107 2e-18
seq142543 107 2e-18
seq141641 107 2e-18
seq20229 100 3e-16
seq192739 95.1 1e-14
seq134707 91.5 2e-13
seq2874773 87.8 2e-12
seq194669 84.2 3e-11
>seq28392
Length=738
Score = 174 bits (192), Expect = 2e-38
Identities = 276/396 (70%), Gaps = 0/396 (0%)
Strand=Plus/Plus
Query 33318 AAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACA 33377
|| || ||||| || || |||| ||| ||||||||||| || ||||| ||||| ||
Sbjct 1 AAGAAGTTAGTCTTCCCCTCCAGTGAAATATTTTCCATAAAGTCAAATGGATTTTCTACT 60
Query 33378 TTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATAT 33437
|| ||| || |||| |||| || || | ||||||||| ||||| || || ||
Sbjct 61 CTGCAAACCTTGCTAAAGCCCAGCTCCAGCATAAGTCTATCTGCCACGAACTCGATGTAC 120
Query 33438 GTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAAT 33497
||||||| || ||||| || ||||| || || || || ||| | || || ||
Sbjct 121 TGCTTCATCAAAGTGCACTTCATCCCAATGAGCTTCACAGGCAGGGCCTCCGTGAGGAAC 180
Query 33498 TCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGA 33557
|| ||||| || || ||||| || || | | || | | ||| |||
Sbjct 181 TCCTGTTCTATCCTAACTGCATTGACGATTATTTCTTTTACTCTCTGTTCCGAAGGTTTG 240
Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617
|| || | ||||| ||||| | || || || || ||||||| |||||| ||||| |||
Sbjct 241 TGCAACAGGTGTTTGAACATAAGGCAGGCAAAGTCACAGTGCAAACCCTCATCTCTGCTA 300
Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677
|| | ||| | ||||||||||| || ||||| || || || || || ||||| |||||
Sbjct 301 ATAAGTTCACTGGAAAACGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATC 360
Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACT 33713
|| || || || |||||||||||||| ||||| |||
Sbjct 361 GACGCAAAAGAACCGGAAAAGAAGATGCCTTCCACT 396
>seq58757
Length=22028
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447
|| || |||||||| ||||| ||||| ||||| || || ||||||||||| ||||| |
Sbjct 18135 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTATAAGGTTCAATT 18194
Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507
||||||||||||||||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 18195 GACTCATTATTTCCCAATATCTGAGCAGTTGAAGCAGTAGGCATCGGGGCAATAAGTAAA 18254
Query 62508 CTATTTCTAAGACCGTA 62524
|| ||||| | ||| ||
Sbjct 18255 CTGTTTCTTATACCATA 18271
>seq2306809
Length=138
Score = 114 bits (126), Expect = 2e-20
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 33889 TGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTG 33948
||||||| ||||| || || || || |||||||| | || ||||||||||| ||||||
Sbjct 1 TGTTTTCCATGGCAATTTGGAAGCCATAGAAACAACGGGCTTCGGTAATCTGAACTTCTT 60
Query 33949 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008
||||| || || | ||||||||||| ||||| |||||||| |||||||| || ||||
Sbjct 61 GGCAAAACCGCTCCACCAAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCA 120
Query 34009 ATACATGTTTTATAAAAT 34026
||||| |||||||
Sbjct 121 GCACATGGGAAATAAAAT 138
>seq85459
Length=10496
Score = 111 bits (122), Expect = 2e-19
Identities = 88/106 (83%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901
|||||||| |||||||| || | |||||||||||||| ||||| |||||||| |||||
Sbjct 6860 ATCTTTAATGTAAGTATCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 6801
Query 33902 CATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947
|| || || || |||||||||| || ||||||||||| ||||||
Sbjct 6800 AATTTGGAAGCCATAGAAACATCGGGCTTCGGTAATCTGAACTTCT 6755
Score = 105 bits (116), Expect = 8e-18
Identities = 88/108 (81%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676
||| | ||| || ||||||||||| || |||||||| || || || || ||||| |||||
Sbjct 8943 AATAAGTTCATTGGAAAACGTGAGACCAGGCATTAGTCCTCGTTTCTTGAGCCAGAATAT 8884
Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
|| || || || |||||||||||||| ||||| ||||| ||||||||
Sbjct 8883 CGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCGGCAAAGGC 8836
>seq378375
Length=7353
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548
|||||||||||||||| | | | || | ||||||||||| ||||| |||||| |||
Sbjct 5661 GTTACTTTCTATGATGTGTATGTTGTCCTGCAAGCTTTCATACTGACTTGTGCAGTATTT 5602
Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607
|||| | ||||| || ||||||||| || |||||||||||||| ||| ||| | ||||
Sbjct 5601 CTTGGTTTGACTGTATATACTCTACAGTCTAAGAGAGATTTCAGCAAATTTGGAGCAGG 5543
>seq142543
Length=7870
Score = 107 bits (118), Expect = 2e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665
|| ||||| || || | || || ||||| |||||||||||||| || || | || ||
Sbjct 6769 TCATCTCTGCTGATGAGCTCATTGGAAAAAGTGAGTCCGGGCATGAGTCCTCTTTTCTTT 6828
Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGC 33724
||||| ||||| | ||| || |||||||| ||||| ||||||||||| |||||||||||
Sbjct 6829 AGCCAGAATATAGCAGCAAAAGATCCGGAGAAGAAAATTCCTTCTACAGCAGCAAAGGC 6887
>seq141641
Length=332
Score = 107 bits (118), Expect = 2e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
||||||||||| ||||| |||||||| |||||||| || |||| ||||| ||||||
Sbjct 330 AAATTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGCACATGGGAAATAAAA 271
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCT 34085
| | | || || || | || | ||| | | || || || || | ||||| ||
Sbjct 270 TCTCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCCTTGGAAAGGTCCACCTCC 211
Query 34086 TCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGG 34145
|| |||||||||| || ||||| || || |||||||| | ||| || ||||| ||||
Sbjct 210 TCAGCTGTCCAAAAGGAAGCCTCAGCTTTCTTATACATCTGCCAAATATCATGGTATTTA 151
Query 34146 ATTGGGAAAATAACAAA 34162
|| || || || |||||
Sbjct 150 ATAGGAAAGATGACAAA 134
>seq20229
Length=11930
Score = 100 bits (110), Expect = 3e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 62626 CATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGT 62685
|||| || |||||||| || | || || || || | ||| || || || || || || |
Sbjct 1644 CATAGGTTTCATATGGGCCATACTCCTTGGCCAGGTCACAGCTGGCTTCCAAGGCTCCAT 1703
Query 62686 AATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGAT 62745
||||||||||||||||||||| |||||| | || || || || || ||||| || |
Sbjct 1704 AATAAATGGTTTCAAAGATCTGCTTATTCAATAACTGGGCCTCTGGACTCTCAAAAGGGT 1763
Query 62746 AATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTC 62805
| | | |||||||| || || || | ||||| || ||||| || || || | ||| |
Sbjct 1764 ACCTCATCAGAATAAAAGCATCTGCCAGACCTTGTACCCCAATTCCAATGGGGCGATGGC 1823
Query 62806 TCTTATTAGA 62815
||||| ||
Sbjct 1824 GTTTATTCGA 1833
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322
|| |||||| ||||| |||||||| ||||||||||| || | || || || || | |
Sbjct 8024 CTCCACTCGCTTCATGAAGAGATCTGGAATCCAAAGGGCAAAGAAAAGGTCCCTGGCACG 8083
Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382
|| || || |||||||| ||||| || | ||| |||||| | | || || |||||||
Sbjct 8084 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCA 8143
Query 63383 CGGTTCCAAGTATATGGC 63400
||||||| ||| || ||
Sbjct 8144 AGGTTCCAGGTAAATAGC 8161
>seq192739
Length=1866
Score = 95.1 bits (104), Expect = 1e-14
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231
||| ||||||||||||||||||||||||||| ||||| ||||| || ||||||||||||
Sbjct 428 TGCGCCTCCATCGAGGACGACTTCAACTATGGCAGCTGCGTGGCCTCCGCCAGCGTGCAC 487
Query 188232 ATACGAATGG 188241
|| |||||||
Sbjct 488 ATCCGAATGG 497
>seq134707
Length=13365
Score = 91.5 bits (100), Expect = 2e-13
Identities = 127/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 188478 TGGCCTCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTA 188537
|||||| |||||||||||| ||||| ||| || | |||| ||| || |||
Sbjct 244 TGGCCTTCATTGTTACTTTCTGTGATGTATATATTGTCCTGCAAGATTTTATACTGATCC 185
Query 188538 CTGCAGTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAAC 188597
|||||| |||| || | ||| | |||||| ||||| ||||||||| ||| |||
Sbjct 184 ATGCAGTATTTCCTGATTCAACTGTGTATACTCTGCAATCTGAGAGAGATTGCAGCAAAT 125
Query 188598 TTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655
||| |||||| | ||| ||| || |||||||| ||||||||| ||||| |||
Sbjct 124 TTGGAACAGGCCTATTTTCTGACTTGTGGATTTTGTGCTTGTCAGGAACCTTGAAGAT 67
>seq2874773
Length=295
Score = 87.8 bits (96), Expect = 2e-12
Identities = 126/178 (71%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 188478 TGGCCTCTGTTGTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTA 188537
|||||| |||||||||||| ||||| ||| || | |||| ||| || ||||
Sbjct 289 TGGCCTTCATTGTTACTTTCTGTGATGTATATATTGTCCTGCAAGATTTTATACTGACCC 230
Query 188538 CTGCAGTGTTTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAAC 188597
||||||||||| || | ||| | |||||| ||| | ||||||||| ||| |||
Sbjct 229 ATGCAGTGTTTCCTGATTCAACTGTGTATACTCTGCAACCTGAGAGAGATTGCAGCAAAT 170
Query 188598 TTGTAACAGGATTGTTTGCTGCTTTCTGGATTTTAATTTTGTCAGGAGTCTTGAGGAT 188655
||| | |||| | ||| ||| || |||||||| ||||| ||| ||||| |||
Sbjct 169 TTGGAGCAGGCCTATTTTCTGACTTGTGGATTTTGTGCTTGTCGGGAACCTTGAAGAT 112
>seq194669
Length=4388
Score = 84.2 bits (92), Expect = 3e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025
|||||||||||||| ||||||||||||||||||||||| || || | || ||||||
Sbjct 1252 AAATTTTCATTCACAATTCCATCACTGGCTGCAAAAAAGGCTAAGATGTGAGAAATAAAA 1193
Query 34026 TATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCAC 34081
|| || || |||| | | || || ||||| | | | ||| || |||| ||| ||
Sbjct 1192 TACTTCTCTTCTGATTTAAGCTTGTTCCAGTGAGGAAGATCCTTTGATAAATCAAC 1137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605502617680080
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