Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003313.1
Length=33106
Score E
Sequences producing significant alignments: (Bits) Value
seq3063309 95.1 2e-15
>seq3063309
Length=1409
Score = 95.1 bits (104), Expect = 2e-15
Identities = 271/415 (65%), Gaps = 4/415 (1%)
Strand=Plus/Minus
Query 14484 TCACCCGTCCAGAACGAGTAAGCAGGGTGCAT--CTTAGAAGAAGGGGTAGAAAAGTAAG 14541
|| |||| |||||||| ||| || ||||| || | | || || |||||||| |
Sbjct 415 TCGCCCGACCAGAACGGGTACGCTTGGTGCGAGACTGCGCTG--GGCGTCGAAAAGTAGG 358
Query 14542 TCTTACGCCACTTTTTATGCGTAGCCATCGCCGAGGCGACTTTGTTCAGCTCGTCAAACT 14601
| || |||||||| || || || |||| || ||| || || | || | ||| || |
Sbjct 357 TTTTGCGCCACTTCTTGTGGGTGCCCATGGCACTGGCCACGGTGCTGAGTTTGTCGAAGT 298
Query 14602 TGCCGATCCAGAAATACTCATCAATATAAACGTGGCCGTGGTAACTCTGTGCCGTTTTGC 14661
| ||||| ||||||||||| | || |||||||| ||||| | ||| || || |||
Sbjct 297 CACGTATCCAAAAATACTCATCGACGTAGACGTGGCCATGGTAGCCCTGGGCGGTGCTGC 238
Query 14662 CGTTGGTAGAGAGATAGTGCAACTCTGCACCATTCGACAAAGTAGAAGGGTTACCCGTGA 14721
||||| || | | ||| ||| || || || | || ||||| || || |
Sbjct 237 TATTGGTCGACAAGAAACGCAGCTCGGCGCCGTTGCTGAGCGTGATCGGGTTGCCGGTCA 178
Query 14722 TCTCAATGCCTAAAAACTCTTTTGCAATCGCCACAATATAGCGACGGAAAACATCAGCTT 14781
||| ||| | || ||| ||||||| | | || || | ||||||| || | |
Sbjct 177 GCTCGATGTCGAACCACTGCTTTGCAAACTGGATGATGTAACTGCGGAAAATTTCCGACT 118
Query 14782 GAGCGCGAGAGGCTGAGAGAAATATCTGGTTATCGCCCGTGAGAATCGCCTGTTCTAACG 14841
| | ||| ||| || || || | |||||| ||||| || || | || | ||||
Sbjct 117 GCGAGCGGCTGGCCGACAGGAACACCTGGTTGTCGCCGGTCAGCACGGCGTCCATGAACG 58
Query 14842 CTTCACCTGCAAAGTAATAGGTTGCGCCAATTTGGCGAGACTTGAGAATGTTACG 14896
|||| || || ||||| || || ||| | ||||| || || ||||| ||
Sbjct 57 CTTCGCCGGCGAAGTAGTACGTCAGGCCCACCTGGCGGCTTTTCAGGATGTTGCG 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 101936626493576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |