Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_003356.1
Length=42575
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 349 9e-92
>seq3088379
Length=10556
Score = 349 bits (386), Expect = 9e-92
Identities = 973/1481 (66%), Gaps = 30/1481 (2%)
Strand=Plus/Plus
Query 22519 ATCCAGCTTTTGCCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTT 22578
|| |||||| | || |||||||| || ||||||||||| || || || || |||||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 22579 GAACCCTGGCAGTTGTTCTGTATTTGTGTTGTGTTTGGGTGGGTGAGAAAAAAGAGCGGC 22638
|| || |||||| | || | | || || || ||||| | || ||| ||||
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGGGTAAAGAAGAAGGGCGGG 723
Query 22639 CTGCGTCGATTTCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATG 22698
| || || || || || ||| ||| | ||| | |||||||| ||||| | |
Sbjct 724 CACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTTGTT 783
Query 22699 TCTGCTGGCGTTGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTAT 22758
| | ||||||||| | ||||| | | ||||| || || ||||| || |||||
Sbjct 784 GCCGGTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCGGCGCCGAGGTGTAC 843
Query 22759 TCCGGGGCCACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGC- 22817
| ||||| || || ||||||||||| ||||| ||||| || || |||| |||||||
Sbjct 844 GCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAAGCTGATGGTC 903
Query 22818 -GCAACGCACGGAACCATTGCGTGAAGCATTTGGTATTGAAGTACATGC-TCAAAGCATG 22875
|||| | | || | || | | || || || || || | || || || |||
Sbjct 904 AGCAAATCCCCGATGC--TGATTCAGGCCGCCGGCATCGAGGTGAACGCCTCGAAT-ATG 960
Query 22876 AGC----CGTCCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGG 22931
| | |||||| | | || || || || || |||| || | || || |||||
Sbjct 961 AACATCCCGTCCG-ACTTCAGT---CGCTTCGAGCCACTGATCGGTAACCCTGGCGACGG 1016
Query 22932 CGCGTCGCCGAGTTGCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTA 22991
||| |||||||| |||||| || | || || || ||||| || | || || | ||
Sbjct 1017 CGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCACAGTA 1076
Query 22992 CCAGACGATGCAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCAC 23051
| | || |||| || |||||||| || || |||||||| ||||| || ||||||||
Sbjct 1077 CGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCACCAC 1136
Query 23052 TGCGGGCTATAACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCT 23111
|| ||| |||||||||| || ||||||||||| || || | || |||| |||||
Sbjct 1137 CGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGATGCT 1196
Query 23112 TGAAGGGATTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGA 23171
| || | ||||| |||| || | ||||| || | || ||||||| || ||
Sbjct 1197 CGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGGGCGA 1256
Query 23172 TGACTGGACAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTA 23231
|||||||| |||||| | | || || || ||||| || || | || || |
Sbjct 1257 CGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGGTGTT 1316
Query 23232 CAGCGATTACCTGTTATCTCAACAGCGCGCGGCAATTAACAACCCACGAAAAGTGGGCGT 23291
|| ||||| ||| ||| | ||| || | | || | |
Sbjct 1317 TCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCAACAC 1376
Query 23292 ATTCAAAACGAAACATCTGAATATCTGGGTGGCAGCAAAAGACGCCTTCTTCAATCTTGT 23351
||||||||| || || || || |||||||| || || || ||| | ||| | |
Sbjct 1377 ATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGCTTTTACAACATGGA 1436
Query 23352 GAACTGGCAGAAATGTGAAGACAGGAGTCTGACGCTGGAGCGTTTTGAGGGGCATACCTG 23411
| |||| | || ||||||| | ||||| ||||||| || |||||||| ||
Sbjct 1437 AAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAAGAGTG 1496
Query 23412 CATC-CTGGCGTTTGACCTTGCGCGAAAGCTGGATTTGAACGCGATGGTACGGCTTTTTA 23470
|| | ||| || ||| | ||||| ||||| ||| ||||| | | || || | ||
Sbjct 1497 GATAGCCGGC-TTCGACTTGGCGCGCAAGCTCGATATGAACTCAAGGGCCAGGTTGTTCT 1555
Query 23471 CCCGAGAGATTGACGGTAAAACGCATTATTATTGTGTCGCACCCAAGTTTTTTGTTCCCT 23530
|| | |||||||| || | || || || | | || || || || | || || |
Sbjct 1556 GGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGGTCCCTT 1615
Query 23531 ACGACACAATCTACAGCGCTGATGTGACAGACAGTCGCACAGCAGAACGTTATCAGAAGT 23590
| ||||| || || | | ||| ||| |||| || || |||| ||| |
Sbjct 1616 ATGACACCGCCTTCAACACCGATA------ACAAGCGCATGGCTGAGCGTTTCCAGGCCT 1669
Query 23591 GGGTTGAAGGG--GGATTT--ATTACCGTTACCGATGGCGCGGAAATTGATTACCGGGAG 23646
|| || | | || | || || ||||| || ||||| | || ||||| ||
Sbjct 1670 GGATTCACTCCAAGCATCTGGAT----GTGACCGACGGTGCGGAGGTCGACTACCGCGAA 1725
Query 23647 ATCCTTGAGTCTGCGAAAGAAGCAAATCGCTTAAACGCAGTGGAGGAGTCACCTATAGAT 23706
||||||||| | || || || || | | | | | ||| || | || || ||
Sbjct 1726 ATCCTTGAGGACACCAAGGAGGCGAACCACCAAGCCCCTGTGCGCGAATGCCCAATTGAC 1785
Query 23707 CCCCACGGAGCCACAAACCTTTCTCACCACCTTGCTGATGAAAACTTAAACCCTATTACC 23766
|| || || || ||| ||| ||| |||||| ||| | || || || | |||
Sbjct 1786 CCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCAATCCGGTCACC 1845
Query 23767 ATCATTCAGAACTACACCAATATGTCGGATCCCATGAAGGAACTTGAGGCGGCTATTGAG 23826
|||| |||||||||||||| ||||||||||| ||||| || || ||||| || || |||
Sbjct 1846 ATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGGCCGCGATAGAG 1905
Query 23827 GCCGGGCGTTTTCATCATGATGGTAATCCTGTGATGACATGGTGTATCAGCAACGTGATT 23886
|| || ||||| |||||||| || || || | ||||| ||||| || ||||||||||
Sbjct 1906 GCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCGGCAACGTGATC 1965
Query 23887 GGAAAGCACATTCCCGGCGACGATGATGTTGTTCGTCCGATCAAACAAGGCAACGAAAAC 23946
|| ||| || | ||||| ||||||| | || || ||||||||||| ||| | || |||
Sbjct 1966 GGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAGGGCGATGACAAC 2025
Query 23947 AAAATCGATGGTGCTGTGGCGCTGATTATGGCGATTGGTCG 23987
|| ||||| || ||||| |||||||||||| |||| || ||
Sbjct 2026 AAGATCGACGGCGCTGTCGCGCTGATTATGACGATAGGACG 2066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 131126112288534
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |