Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq3088379 349 9e-92 >seq3088379 Length=10556 Score = 349 bits (386), Expect = 9e-92 Identities = 973/1481 (66%), Gaps = 30/1481 (2%) Strand=Plus/Plus Query 22519 ATCCAGCTTTTGCCACACACCAAAGGGGAGTGGGCATTTAAACGGATGCCCATTACGCTT 22578 || |||||| | || |||||||| || ||||||||||| || || || || ||||| Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 22579 GAACCCTGGCAGTTGTTCTGTATTTGTGTTGTGTTTGGGTGGGTGAGAAAAAAGAGCGGC 22638 || || |||||| | || | | || || || ||||| | || ||| |||| Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTAGCCGTGACATTCGGCTGGGTAAAGAAGAAGGGCGGG 723 Query 22639 CTGCGTCGATTTCGCGAGGCTTACAACGAAATACCCCGTAAAAACGGGAAATCAGCAATG 22698 | || || || || || ||| ||| | ||| | |||||||| ||||| | | Sbjct 724 CACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTTGTT 783 Query 22699 TCTGCTGGCGTTGGTCTGTATATGTTTGCCTGCGATGATGAATTTGGCGCTGAAGTGTAT 22758 | | ||||||||| | ||||| | | ||||| || || ||||| || ||||| Sbjct 784 GCCGGTGGCGTTGGCATCAGCATGTTCGTCGCCGATGGCGAGTTCGGCGCCGAGGTGTAC 843 Query 22759 TCCGGGGCCACAACAGAGAAACAGGCGTGGGAAGTTTTTCGTCCAGCCAGACTGATGGC- 22817 | ||||| || || ||||||||||| ||||| ||||| || || |||| ||||||| Sbjct 844 GCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAAGCTGATGGTC 903 Query 22818 -GCAACGCACGGAACCATTGCGTGAAGCATTTGGTATTGAAGTACATGC-TCAAAGCATG 22875 |||| | | || | || | | || || || || || | || || || ||| Sbjct 904 AGCAAATCCCCGATGC--TGATTCAGGCCGCCGGCATCGAGGTGAACGCCTCGAAT-ATG 960 Query 22876 AGC----CGTCCGGAGGACGGTGCCCGTTTTGAACCGTTGATTGGAGATCCCGGAGACGG 22931 | | |||||| | | || || || || || |||| || | || || ||||| Sbjct 961 AACATCCCGTCCG-ACTTCAGT---CGCTTCGAGCCACTGATCGGTAACCCTGGCGACGG 1016 Query 22932 CGCGTCGCCGAGTTGCGCCCTCATTGATGAATATCACGAGCATCAGACCGATGCGCTTTA 22991 ||| |||||||| |||||| || | || || || ||||| || | || || | || Sbjct 1017 CGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCACAGTA 1076 Query 22992 CCAGACGATGCAAACTGGGATGGGGGCACGTCGTCAGCCGCTGATTTTTGGTATCACCAC 23051 | | || |||| || |||||||| || || |||||||| ||||| || |||||||| Sbjct 1077 CGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCACCAC 1136 Query 23052 TGCGGGCTATAACATTGAAGGACCATGCTACGACAAACGTCGTGAAGTGATCGAAATGCT 23111 || ||| |||||||||| || ||||||||||| || || | || |||| ||||| Sbjct 1137 CGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGATGCT 1196 Query 23112 TGAAGGGATTGTGCCCAATGATGAACTGTTCGGGATTATTTATACCATTGACGACGGGGA 23171 | || | ||||| |||| || | ||||| || | || ||||||| || || Sbjct 1197 CGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGGGCGA 1256 Query 23172 TGACTGGACAGATCCGGCGGTATTGCGTAAAGCGAACCCCAATATGGGGATTTCTGTCTA 23231 |||||||| |||||| | | || || || ||||| || || | || || | Sbjct 1257 CGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGGTGTT 1316 Query 23232 CAGCGATTACCTGTTATCTCAACAGCGCGCGGCAATTAACAACCCACGAAAAGTGGGCGT 23291 || ||||| ||| ||| | ||| || | | || | | Sbjct 1317 TCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCAACAC 1376 Query 23292 ATTCAAAACGAAACATCTGAATATCTGGGTGGCAGCAAAAGACGCCTTCTTCAATCTTGT 23351 ||||||||| || || || || |||||||| || || || ||| | ||| | | Sbjct 1377 ATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGCTTTTACAACATGGA 1436 Query 23352 GAACTGGCAGAAATGTGAAGACAGGAGTCTGACGCTGGAGCGTTTTGAGGGGCATACCTG 23411 | |||| | || ||||||| | ||||| ||||||| || |||||||| || Sbjct 1437 AAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAAGAGTG 1496 Query 23412 CATC-CTGGCGTTTGACCTTGCGCGAAAGCTGGATTTGAACGCGATGGTACGGCTTTTTA 23470 || | ||| || ||| | ||||| ||||| ||| ||||| | | || || | || Sbjct 1497 GATAGCCGGC-TTCGACTTGGCGCGCAAGCTCGATATGAACTCAAGGGCCAGGTTGTTCT 1555 Query 23471 CCCGAGAGATTGACGGTAAAACGCATTATTATTGTGTCGCACCCAAGTTTTTTGTTCCCT 23530 || | |||||||| || | || || || | | || || || || | || || | Sbjct 1556 GGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGGTCCCTT 1615 Query 23531 ACGACACAATCTACAGCGCTGATGTGACAGACAGTCGCACAGCAGAACGTTATCAGAAGT 23590 | ||||| || || | | ||| ||| |||| || || |||| ||| | Sbjct 1616 ATGACACCGCCTTCAACACCGATA------ACAAGCGCATGGCTGAGCGTTTCCAGGCCT 1669 Query 23591 GGGTTGAAGGG--GGATTT--ATTACCGTTACCGATGGCGCGGAAATTGATTACCGGGAG 23646 || || | | || | || || ||||| || ||||| | || ||||| || Sbjct 1670 GGATTCACTCCAAGCATCTGGAT----GTGACCGACGGTGCGGAGGTCGACTACCGCGAA 1725 Query 23647 ATCCTTGAGTCTGCGAAAGAAGCAAATCGCTTAAACGCAGTGGAGGAGTCACCTATAGAT 23706 ||||||||| | || || || || | | | | | ||| || | || || || Sbjct 1726 ATCCTTGAGGACACCAAGGAGGCGAACCACCAAGCCCCTGTGCGCGAATGCCCAATTGAC 1785 Query 23707 CCCCACGGAGCCACAAACCTTTCTCACCACCTTGCTGATGAAAACTTAAACCCTATTACC 23766 || || || || ||| ||| ||| |||||| ||| | || || || | ||| Sbjct 1786 CCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCAATCCGGTCACC 1845 Query 23767 ATCATTCAGAACTACACCAATATGTCGGATCCCATGAAGGAACTTGAGGCGGCTATTGAG 23826 |||| |||||||||||||| ||||||||||| ||||| || || ||||| || || ||| Sbjct 1846 ATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGGCCGCGATAGAG 1905 Query 23827 GCCGGGCGTTTTCATCATGATGGTAATCCTGTGATGACATGGTGTATCAGCAACGTGATT 23886 || || ||||| |||||||| || || || | ||||| ||||| || |||||||||| Sbjct 1906 GCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCGGCAACGTGATC 1965 Query 23887 GGAAAGCACATTCCCGGCGACGATGATGTTGTTCGTCCGATCAAACAAGGCAACGAAAAC 23946 || ||| || | ||||| ||||||| | || || ||||||||||| ||| | || ||| Sbjct 1966 GGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAGGGCGATGACAAC 2025 Query 23947 AAAATCGATGGTGCTGTGGCGCTGATTATGGCGATTGGTCG 23987 || ||||| || ||||| |||||||||||| |||| || || Sbjct 2026 AAGATCGACGGCGCTGTCGCGCTGATTATGACGATAGGACG 2066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131126112288534